Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HRJ37_RS10675 Genome accession   NZ_CP054136
Coordinates   2092510..2093145 (+) Length   211 a.a.
NCBI ID   WP_050827323.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 11-1-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2087510..2098145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ37_RS10635 (HRJ37_10635) - 2087676..2088794 (+) 1119 WP_235672115.1 NADH-dependent flavin oxidoreductase -
  HRJ37_RS10640 (HRJ37_10640) - 2088843..2089349 (-) 507 WP_173408088.1 PTS glucose transporter subunit IIA -
  HRJ37_RS10645 (HRJ37_10645) - 2089518..2089937 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  HRJ37_RS10650 (HRJ37_10650) - 2089959..2090411 (-) 453 WP_173408089.1 YppG family protein -
  HRJ37_RS10655 (HRJ37_10655) - 2090520..2090900 (-) 381 WP_225310452.1 YppE family protein -
  HRJ37_RS10660 (HRJ37_10660) - 2090950..2091183 (-) 234 WP_235672116.1 DUF5446 family protein -
  HRJ37_RS10665 (HRJ37_10665) sspM 2091380..2091484 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  HRJ37_RS10670 (HRJ37_10670) - 2091507..2092463 (-) 957 WP_024718529.1 DUF2515 domain-containing protein -
  HRJ37_RS10675 (HRJ37_10675) recU 2092510..2093145 (+) 636 WP_050827323.1 Holliday junction resolvase RecU Machinery gene
  HRJ37_RS10680 (HRJ37_10680) - 2093165..2095852 (+) 2688 WP_057079359.1 PBP1A family penicillin-binding protein -
  HRJ37_RS10685 (HRJ37_10685) - 2095888..2096397 (-) 510 WP_035702942.1 YpoC family protein -
  HRJ37_RS10690 (HRJ37_10690) nth 2096394..2097056 (-) 663 WP_008344602.1 endonuclease III -
  HRJ37_RS10695 (HRJ37_10695) - 2097074..2097778 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24337.64 Da        Isoelectric Point: 9.6582

>NTDB_id=450993 HRJ37_RS10675 WP_050827323.1 2092510..2093145(+) (recU) [Bacillus altitudinis strain 11-1-1]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESKHHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=450993 HRJ37_RS10675 WP_050827323.1 2092510..2093145(+) (recU) [Bacillus altitudinis strain 11-1-1]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGAATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAC
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATATAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGCCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCATCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697