Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   I6G22_RS02195 Genome accession   NZ_CP065737
Coordinates   379852..381828 (-) Length   658 a.a.
NCBI ID   WP_023189664.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_865     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 374852..386828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G22_RS02170 (I6G22_02170) dapA 375397..376290 (-) 894 WP_003129414.1 4-hydroxy-tetrahydrodipicolinate synthase -
  I6G22_RS02175 (I6G22_02175) - 376631..377086 (-) 456 WP_023189662.1 NUDIX hydrolase -
  I6G22_RS02180 (I6G22_02180) - 377097..378173 (-) 1077 WP_023189663.1 aspartate-semialdehyde dehydrogenase -
  I6G22_RS02185 (I6G22_02185) - 378268..379131 (-) 864 WP_003129417.1 MIP/aquaporin family protein -
  I6G22_RS02190 (I6G22_02190) - 379503..379757 (-) 255 WP_025017019.1 hypothetical protein -
  I6G22_RS02195 (I6G22_02195) recP/tkt 379852..381828 (-) 1977 WP_023189664.1 transketolase Machinery gene
  I6G22_RS02200 (I6G22_02200) - 382010..383267 (-) 1258 Protein_373 PTS ascorbate transporter subunit IIC -
  I6G22_RS02205 (I6G22_02205) - 383328..383627 (-) 300 WP_025017020.1 PTS sugar transporter subunit IIB -
  I6G22_RS02210 (I6G22_02210) - 383629..385569 (-) 1941 WP_023189668.1 BglG family transcription antiterminator -
  I6G22_RS02215 (I6G22_02215) - 385743..386384 (-) 642 WP_017864827.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71724.88 Da        Isoelectric Point: 4.8410

>NTDB_id=450981 I6G22_RS02195 WP_023189664.1 379852..381828(-) (recP/tkt) [Lactococcus lactis strain FDAARGOS_865]
MFDTTDQLAVNTIRTLSLDAIQKANSGHPGLPMGSAPMAYVLWSKFLNVNPKTSRKWSNRDRFVLSAGHGSAMLYSLLHL
AGYNVTTDDLKGFRQWQSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAQYNKPGFDIVDHYTYALNGDGD
LMEGVSQEAASLAGKLKLGKLILFYDSNNISLDGDLSMSFIDDIQKRFESYGWQHLLVKDGNDLEEIAAAVEVAKAEKSK
PTIIEVKTVIGFGAEKQGTSAVHGAPLGAEGVAFAKKAYGWDYPEFTVPEEVSKRFLETTVARGEAMEQVWRNTFDDYSE
KYPELAEQYAKAFENETPELTLTKHEMETSKASRVTSQESIQELSAQMPNLWGGSADLSASNNTMVKVEEDFMPDNYAGR
NIWFGVREFAMGAIMNGIALHGGTRVYGGTFFVFSNYMLPSVRMAALQSLPVTYVWTHDSIAVGEDGPTHEPVEQLASVR
SIPNLDVIRPADGNEVVAAWRRAASSKSRPTALILTRQNLPVLPDTYELAEEGLNRGAYILSKEEGKLEGIIIATGSEVA
LALEAKKTLGSGIRVVSMPSMNIFDEQEAAYREEILPKAVRRRLAIEAGTSYGWGKYVGLDGATVTVDTWGASAPANIVL
PAYGFTAENVVKAYKELD

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=450981 I6G22_RS02195 WP_023189664.1 379852..381828(-) (recP/tkt) [Lactococcus lactis strain FDAARGOS_865]
ATGTTTGATACTACTGATCAATTGGCTGTAAATACGATTCGTACTCTATCATTAGATGCGATTCAAAAAGCAAATTCAGG
ACATCCTGGACTTCCAATGGGCTCTGCACCAATGGCTTATGTACTTTGGAGCAAATTTCTTAATGTGAACCCTAAGACAA
GTCGTAAATGGTCAAATCGTGACCGTTTTGTCTTGTCTGCTGGTCATGGTTCTGCAATGTTATATAGTTTATTACATTTG
GCAGGTTATAATGTAACGACTGATGATTTAAAAGGTTTCCGTCAATGGCAATCAAAAACACCGGGACATCCAGAAGTTAA
TCATACAGATGGTGTTGAAGCAACAACAGGTCCTTTAGGACAAGGAATTGCCAATGCTGTCGGTATGGCAATGGCTGAAG
CACATTTAGCTGCGCAATACAATAAACCTGGTTTTGATATTGTTGACCATTACACTTACGCCTTAAATGGTGATGGTGAT
TTGATGGAAGGTGTTTCACAAGAAGCAGCTTCACTTGCAGGTAAATTGAAACTTGGTAAATTGATTCTTTTCTATGATTC
AAATAATATTTCTCTAGATGGTGACTTATCTATGTCATTTATTGATGATATTCAAAAACGTTTTGAATCATATGGCTGGC
AACATTTATTGGTAAAAGATGGAAATGATTTAGAAGAAATTGCAGCAGCTGTTGAAGTGGCTAAAGCTGAAAAATCTAAA
CCAACAATTATTGAAGTTAAAACAGTCATTGGTTTTGGTGCCGAAAAACAAGGAACTTCAGCAGTTCACGGAGCTCCTCT
TGGAGCTGAAGGTGTTGCATTTGCCAAGAAAGCATATGGTTGGGATTACCCTGAATTTACAGTTCCTGAAGAAGTTTCAA
AACGCTTTTTAGAAACGACAGTTGCGCGTGGTGAAGCAATGGAGCAAGTATGGCGCAATACTTTTGATGATTATTCTGAA
AAATACCCTGAGCTTGCTGAGCAATACGCAAAAGCTTTTGAAAATGAAACGCCAGAGCTTACTTTGACCAAGCATGAAAT
GGAAACAAGCAAGGCCAGCCGTGTAACTTCACAAGAATCTATCCAAGAATTATCAGCTCAAATGCCAAATCTTTGGGGCG
GGTCTGCTGACCTTTCGGCTTCAAATAATACAATGGTTAAAGTTGAAGAAGACTTCATGCCAGATAACTATGCTGGACGT
AATATTTGGTTTGGTGTACGTGAATTTGCGATGGGAGCCATTATGAATGGGATTGCTTTGCATGGTGGAACTCGTGTCTA
TGGTGGAACATTCTTCGTCTTCTCAAACTACATGCTTCCTTCTGTTCGGATGGCTGCTCTACAAAGCTTGCCAGTCACTT
ATGTTTGGACACATGATTCCATTGCTGTTGGGGAAGATGGTCCAACTCACGAACCTGTTGAACAATTAGCTTCTGTTCGC
TCAATTCCTAATTTGGATGTAATTCGTCCAGCTGATGGAAATGAAGTAGTGGCTGCATGGCGTCGTGCTGCATCAAGTAA
AAGCCGCCCAACCGCACTTATTTTGACTCGTCAAAATCTTCCAGTTTTACCTGATACTTATGAATTGGCTGAAGAAGGTC
TGAATCGTGGGGCCTATATTCTTTCAAAAGAAGAAGGAAAACTTGAAGGAATCATCATTGCGACTGGTTCAGAAGTAGCA
TTAGCTCTTGAAGCTAAGAAGACTTTGGGTTCTGGCATTCGTGTCGTTTCAATGCCTTCAATGAATATTTTTGACGAACA
AGAAGCAGCTTATCGCGAAGAAATTTTACCAAAAGCTGTAAGACGTCGTTTAGCGATTGAAGCTGGTACAAGTTACGGAT
GGGGTAAATATGTTGGACTTGATGGTGCAACAGTTACAGTAGATACTTGGGGCGCTTCGGCACCAGCAAATATCGTTCTT
CCGGCTTACGGATTTACTGCTGAAAATGTAGTTAAAGCATACAAAGAGCTTGACTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(551-650)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

54.955

100

0.556