Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HRJ37_RS05550 Genome accession   NZ_CP054136
Coordinates   1085677..1086627 (+) Length   316 a.a.
NCBI ID   WP_173407931.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 11-1-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1080677..1091627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ37_RS05530 (HRJ37_05530) - 1081911..1082393 (+) 483 WP_008348662.1 hypothetical protein -
  HRJ37_RS05535 (HRJ37_05535) - 1082424..1083863 (-) 1440 WP_173407929.1 PLP-dependent aminotransferase family protein -
  HRJ37_RS05540 (HRJ37_05540) - 1084007..1085176 (+) 1170 WP_173407930.1 MFS transporter -
  HRJ37_RS05545 (HRJ37_05545) - 1085239..1085517 (+) 279 WP_024720011.1 barstar family protein -
  HRJ37_RS05550 (HRJ37_05550) ceuB 1085677..1086627 (+) 951 WP_173407931.1 ABC transporter permease Machinery gene
  HRJ37_RS05555 (HRJ37_05555) - 1086620..1087570 (+) 951 WP_173407932.1 iron chelate uptake ABC transporter family permease subunit -
  HRJ37_RS05560 (HRJ37_05560) - 1087561..1088319 (+) 759 WP_019743341.1 ABC transporter ATP-binding protein -
  HRJ37_RS05565 (HRJ37_05565) - 1088342..1089286 (+) 945 WP_045034716.1 siderophore ABC transporter substrate-binding protein -
  HRJ37_RS05570 (HRJ37_05570) - 1089426..1090382 (+) 957 WP_007499147.1 LCP family protein -
  HRJ37_RS05575 (HRJ37_05575) - 1090615..1091049 (-) 435 WP_039167431.1 hypothetical protein -
  HRJ37_RS05580 (HRJ37_05580) - 1091135..1091497 (-) 363 WP_017360224.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34973.30 Da        Isoelectric Point: 9.7561

>NTDB_id=450973 HRJ37_RS05550 WP_173407931.1 1085677..1086627(+) (ceuB) [Bacillus altitudinis strain 11-1-1]
MKLYQLSLLFVCLACASLFVGVQDLSLLQLFHLSDEQMNTLFSSRIPRLMSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILTAMLVFTQASPLMKMAIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAVNLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIIGSAIFLYMLLRRRRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=450973 HRJ37_RS05550 WP_173407931.1 1085677..1086627(+) (ceuB) [Bacillus altitudinis strain 11-1-1]
ATGAAGTTGTACCAATTAAGTTTGTTGTTTGTGTGTTTGGCATGTGCGTCGCTGTTTGTCGGAGTACAGGACCTGTCTCT
TTTACAGTTGTTTCATCTATCAGATGAACAAATGAACACCTTATTTTCAAGTCGCATCCCGCGGCTGATGAGTATTGTGC
TTGCTGGCATGAGCCTGAGCTTATGCGGTTTTATCATGCAAAGCATGACGAGAAATAAATTTGTCTCTCCAACGACTGCA
GGAACAATGGATTGGGCCAAGCTGGGTATTTTAACCGCTATGCTTGTTTTTACACAGGCAAGCCCGCTGATGAAAATGGC
GATTGCGTTTTTATTTACGTTAGCTGGCAATCTATTATTCTTAAAAATTCTACGCCATATTAAGGTGAACGATACGATCT
ACGTACCGTTAGTCGGCTTAATGTTTGGCGGAATTGTTAGTTCAATTTCCACGTTTATAGCCTATAAATATGATTTGATC
CAAAACGTATCCGCATGGCTGCAAGGGGATTTTTCTCTTATTGTTCAGGGGCGTTATGAACTGCTCTATGTGAGTGTTCC
TCTATTGATCATCGCGTATTTATATGCTGACCGCTTTACAGTGGCTGGTATGGGTGAGAGCTTTGCCGTCAATTTAGGTT
TAACGTATAAACGTGTCATGGCAGTTGGTTTGGTGATTGTTTCGATGATTACTTCTGTAACGATTTTGACTGTTGGCATG
CTGCCATTCCTCGGCTTAATCATTCCGAATATTGTATCGATCTACCGAGGGGATCACTTGAAAAAGAGCCTTCCGCATAC
GGCTTTATTAGGGGCCATTTTTGTGCTCATATGTGATGTACTCGGACGGGTGATCATTTATCCATATGAAATATCTGTCG
GGCTTATGGTTGGCATCATTGGAAGTGCGATCTTCCTGTACATGTTATTAAGGAGGAGGCGCTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.667

94.937

0.491