Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HRJ37_RS00020 Genome accession   NZ_CP054136
Coordinates   3059..4171 (+) Length   370 a.a.
NCBI ID   WP_007497487.1    Uniprot ID   A0A9X0KBN2
Organism   Bacillus altitudinis strain 11-1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1540..32451 3059..4171 within 0


Gene organization within MGE regions


Location: 1540..32451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ37_RS00010 (HRJ37_00010) dnaN 1540..2676 (+) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  HRJ37_RS00015 (HRJ37_00015) yaaA 2827..3042 (+) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  HRJ37_RS00020 (HRJ37_00020) recF 3059..4171 (+) 1113 WP_007497487.1 DNA replication/repair protein RecF Machinery gene
  HRJ37_RS00025 (HRJ37_00025) remB 4189..4434 (+) 246 WP_024718423.1 extracellular matrix regulator RemB -
  HRJ37_RS00030 (HRJ37_00030) gyrB 4492..6408 (+) 1917 WP_024718422.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HRJ37_RS00035 (HRJ37_00035) gyrA 6643..9147 (+) 2505 WP_173407664.1 DNA gyrase subunit A -
  HRJ37_RS00065 (HRJ37_00065) - 14542..15510 (-) 969 WP_144668620.1 YaaC family protein -
  HRJ37_RS00070 (HRJ37_00070) guaB 15632..17098 (+) 1467 WP_008342039.1 IMP dehydrogenase -
  HRJ37_RS00075 (HRJ37_00075) - 17259..18584 (+) 1326 WP_008342036.1 D-alanyl-D-alanine carboxypeptidase family protein -
  HRJ37_RS00080 (HRJ37_00080) - 18710..20062 (-) 1353 WP_061418470.1 IS1182 family transposase -
  HRJ37_RS00085 (HRJ37_00085) - 20200..21678 (-) 1479 WP_008342034.1 PLP-dependent aminotransferase family protein -
  HRJ37_RS00090 (HRJ37_00090) pdxS 21925..22809 (+) 885 WP_008342033.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  HRJ37_RS00095 (HRJ37_00095) pdxT 22830..23420 (+) 591 WP_100325786.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  HRJ37_RS00100 (HRJ37_00100) serS 23738..25012 (+) 1275 WP_008342028.1 serine--tRNA ligase -
  HRJ37_RS20425 - 25609..25941 (+) 333 Protein_15 methyl-accepting chemotaxis protein -
  HRJ37_RS00115 (HRJ37_00115) - 26251..26910 (-) 660 WP_024719578.1 deoxynucleoside kinase -
  HRJ37_RS00120 (HRJ37_00120) - 26907..27530 (-) 624 WP_017366700.1 deoxynucleoside kinase -
  HRJ37_RS00125 (HRJ37_00125) - 27610..28857 (-) 1248 WP_235672153.1 glycoside hydrolase family 18 protein -
  HRJ37_RS00130 (HRJ37_00130) - 28957..29511 (-) 555 WP_041091587.1 isochorismatase family cysteine hydrolase -
  HRJ37_RS00135 (HRJ37_00135) tadA 29591..30067 (+) 477 WP_100325785.1 tRNA adenosine(34) deaminase TadA -
  HRJ37_RS00145 (HRJ37_00145) dnaX 30739..32451 (+) 1713 WP_100325784.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42574.65 Da        Isoelectric Point: 7.1297

>NTDB_id=450962 HRJ37_RS00020 WP_007497487.1 3059..4171(+) (recF) [Bacillus altitudinis strain 11-1-1]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=450962 HRJ37_RS00020 WP_007497487.1 3059..4171(+) (recF) [Bacillus altitudinis strain 11-1-1]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGAAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGTCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTGCTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.198

99.73

0.83