Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HRV88_RS15205 Genome accession   NZ_CP054129
Coordinates   3131791..3132405 (-) Length   204 a.a.
NCBI ID   WP_235124368.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain BY9F36     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3126791..3137405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRV88_RS15190 (HRV88_15150) helD 3127015..3129069 (-) 2055 WP_235124366.1 DNA helicase IV -
  HRV88_RS15195 (HRV88_15155) - 3129195..3129641 (+) 447 WP_003831998.1 YccF domain-containing protein -
  HRV88_RS15200 (HRV88_15160) yccS 3129660..3131813 (+) 2154 WP_048236463.1 YccS family putative transporter -
  HRV88_RS15205 (HRV88_15165) sxy/tfoX 3131791..3132405 (-) 615 WP_235124368.1 TfoX/Sxy family DNA transformation protein Regulator
  HRV88_RS15210 (HRV88_15170) sulA 3132623..3133132 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  HRV88_RS15215 (HRV88_15175) ompA 3133490..3134548 (+) 1059 WP_079934917.1 porin OmpA -
  HRV88_RS15220 (HRV88_15180) matP 3134637..3135089 (-) 453 WP_032942905.1 macrodomain Ter protein MatP -
  HRV88_RS15225 (HRV88_15185) - 3135275..3137035 (+) 1761 WP_048227018.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23140.49 Da        Isoelectric Point: 8.6049

>NTDB_id=450953 HRV88_RS15205 WP_235124368.1 3131791..3132405(-) (sxy/tfoX) [Citrobacter portucalensis strain BY9F36]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPAWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=450953 HRV88_RS15205 WP_235124368.1 3131791..3132405(-) (sxy/tfoX) [Citrobacter portucalensis strain BY9F36]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGCCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGCTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGGGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGTGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.157

100

0.672