Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HQ912_RS24715 Genome accession   NZ_CP054128
Coordinates   5549717..5551084 (-) Length   455 a.a.
NCBI ID   WP_030140305.1    Uniprot ID   A0A0B1YXD7
Organism   Pseudomonas sp. MPDS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5544717..5556084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ912_RS24690 (HQ912_24690) - 5544887..5545606 (+) 720 WP_173407398.1 GntR family transcriptional regulator -
  HQ912_RS24695 (HQ912_24695) yjiA 5545598..5546566 (-) 969 WP_173407399.1 GTPase -
  HQ912_RS24700 (HQ912_24700) - 5546877..5547074 (-) 198 WP_047230563.1 YbdD/YjiX family protein -
  HQ912_RS24705 (HQ912_24705) - 5547091..5549157 (-) 2067 WP_076386404.1 carbon starvation CstA family protein -
  HQ912_RS24710 (HQ912_24710) - 5549317..5549685 (+) 369 WP_107322961.1 PilZ domain-containing protein -
  HQ912_RS24715 (HQ912_24715) radA 5549717..5551084 (-) 1368 WP_030140305.1 DNA repair protein RadA Machinery gene
  HQ912_RS24720 (HQ912_24720) - 5551128..5551679 (-) 552 WP_372241376.1 ankyrin repeat domain-containing protein -
  HQ912_RS24725 (HQ912_24725) katB 5551828..5553369 (-) 1542 WP_173407400.1 catalase KatB -
  HQ912_RS24730 (HQ912_24730) mscL 5553652..5554065 (+) 414 WP_047229580.1 large-conductance mechanosensitive channel protein MscL -
  HQ912_RS24735 (HQ912_24735) - 5554122..5554898 (-) 777 WP_076386408.1 ferredoxin--NADP reductase -
  HQ912_RS24740 (HQ912_24740) - 5555190..5555744 (+) 555 WP_260990054.1 autoinducer binding domain-containing protein -
  HQ912_RS27960 - 5555777..5555902 (+) 126 WP_260990097.1 LuxR C-terminal-related transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48774.24 Da        Isoelectric Point: 6.8987

>NTDB_id=450933 HQ912_RS24715 WP_030140305.1 5549717..5551084(-) (radA) [Pseudomonas sp. MPDS]
MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLTETMVESGGAAAPTGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=450933 HQ912_RS24715 WP_030140305.1 5549717..5551084(-) (radA) [Pseudomonas sp. MPDS]
ATGGCCAAGGCAAAGCGCATGTATGGCTGCACCGAGTGCGGCTCGACCTTTCCCAAATGGGCCGGCCAGTGCAGTGAGTG
CGGTGCCTGGAACACCTTGACCGAAACCATGGTGGAGAGTGGCGGTGCCGCAGCCCCCACCGGTCGCACGGGGTGGGCCG
GTCAGCAGGCGCAAATCAAGACCCTCGCCGAAGTCAGCGTCGAGGAAATTCCACGGTTTTCCACCGCGTCCGGCGAGCTG
GACCGCGTATTGGGCGGTGGTCTGGTGGACGGTTCGGTCGTGCTGATTGGCGGGGACCCGGGCATCGGCAAGTCCACCAT
CCTGTTGCAAACCTTGTGCAACCTGGCCACGCGCATGCCGGCGCTGTACGTCACTGGCGAGGAATCTCAGCAGCAAGTCG
CCATGCGCGCCCGGCGTCTGGGGCTGCCCCAGGATCAACTGCGGGTCATGACCGAGACGTGCATCGAAACCATCATCGCC
ACGGCCCGCCTGGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAACTGCAATCGGCGCC
GGGCGGCGTGTCACAGGTGCGTGAAAGCGCGGCGTTGCTGGTGCGGTATGCCAAGCAGAGCGGTACGGCGATTTTCCTGG
TGGGGCACGTCACCAAGGAAGGCGCGCTGGCAGGCCCGCGGGTGCTGGAGCACATGGTGGATACCGTGTTGTATTTCGAG
GGCGAATCCGACGGTCGCCTGCGTTTGTTGCGGGCAGTGAAGAATCGCTTTGGCGCCGTCAATGAATTGGGTGTGTTCGG
CATGACCGACAGAGGCTTGAAAGAAGTCTCGAATCCTTCGGCGATTTTTCTCACGCGCGCCCAGGAAGAAGTGCCGGGCA
GTGTGGTCATGGCGACCTGGGAAGGCACCCGACCGATGCTGGTGGAGGTTCAGGCGCTGGTGGATGACAGCCATTTGGCG
AACCCGCGTCGGGTCACCTTGGGGCTGGATCAGAATCGGCTCGCCATGTTGCTGGCGGTCCTGCATCGACACGGTGGCAT
TCCTACCCACGATCAGGATGTTTTCCTCAACGTGGTGGGCGGCGTCAAAGTATTGGAAACCGCGTCTGACCTGGCGTTGA
TGGCGGCGGTCATGTCCAGCTTGCGCAATCGGCCGCTGCCCCATGATCTGCTGGTGTTCGGTGAAGTGGGGCTGTCGGGG
GAAGTCCGGCCGGTGCCCAGCGGACAGGAGCGGCTCAAGGAGGCGGCCAAGCACGGTTTCAAACGCGCCATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCGCCTGCCGGGTTGCAGATCATTGCCGTGACTCGCCTGGAACAGGCGCTGGATGCATTGT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1YXD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464