Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HQ912_RS09110 Genome accession   NZ_CP054128
Coordinates   2069554..2071794 (+) Length   746 a.a.
NCBI ID   WP_173406691.1    Uniprot ID   -
Organism   Pseudomonas sp. MPDS     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2064554..2076794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ912_RS09085 (HQ912_09085) - 2065621..2066280 (+) 660 WP_173406690.1 transglutaminase-like domain-containing protein -
  HQ912_RS09090 (HQ912_09090) - 2066326..2066949 (+) 624 WP_047228176.1 glutathione S-transferase family protein -
  HQ912_RS09095 (HQ912_09095) - 2067083..2068015 (+) 933 WP_047228177.1 ABC transporter ATP-binding protein -
  HQ912_RS09100 (HQ912_09100) - 2068012..2068791 (+) 780 WP_047228178.1 ABC transporter permease -
  HQ912_RS09105 (HQ912_09105) - 2068893..2069408 (-) 516 WP_047228179.1 DUF2062 domain-containing protein -
  HQ912_RS09110 (HQ912_09110) comA 2069554..2071794 (+) 2241 WP_173406691.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HQ912_RS09115 (HQ912_09115) exbB 2071897..2072532 (+) 636 WP_160893079.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HQ912_RS09120 (HQ912_09120) - 2072529..2072957 (+) 429 WP_047228182.1 ExbD/TolR family protein -
  HQ912_RS09125 (HQ912_09125) lpxK 2072957..2073967 (+) 1011 WP_076383825.1 tetraacyldisaccharide 4'-kinase -
  HQ912_RS09130 (HQ912_09130) - 2073991..2074176 (+) 186 WP_003179363.1 Trm112 family protein -
  HQ912_RS09135 (HQ912_09135) kdsB 2074173..2074937 (+) 765 WP_076383826.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HQ912_RS09140 (HQ912_09140) - 2074937..2075401 (+) 465 WP_092400061.1 low molecular weight protein-tyrosine-phosphatase -
  HQ912_RS09145 (HQ912_09145) murB 2075398..2076417 (+) 1020 WP_173406692.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 81087.30 Da        Isoelectric Point: 9.8399

>NTDB_id=450916 HQ912_RS09110 WP_173406691.1 2069554..2071794(+) (comA) [Pseudomonas sp. MPDS]
MRTGMVALALGLLTPVFCPALPPLWLIAVMPVLALMVLPFRTHPLGFFLIGLAWACLSAQLALDDRLPAALDGETRWLEG
RVVGLPQYNEGVVRFELTDAHSRRTRLPSSMRLAWFGGPPVSSGERWRLAVKLKRPTGLLNPHGFDYQAWLLSRGIGATG
TVKDGHLRQPAQGAWRDGVRQALAQVDAQGRSGALAALVLGDGAGLSRDDWQVLQDTGTVHLLVISGQHIGLLAALVYLL
VAGAARYGMWPVRLPWLPWACALAFIAALGYGLLAGFEVPVRRACAMIGLVLLWRLRYRHPDPWWAWLLAFNGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVAVGLCPILLILGLPISLSGPLVNLVAVPWVSLLVLPPAL
LGTALLPMPFVGEGLLWIAGGLLDLLFKGLALVAGRIPAWVPAAIPLWVWCMAALGALLLLLPKGVPLRVLGWPMVLLVV
FPPREDVPPGQAEIWQLDVGQGLAVLVRTRHHALLYDAGPRFGEADAGERVVLPTLRKLGVAGLDLMLLSHADADHAGGA
QAVRNGLPTVRVVSGDPAALPATLQAEACDSGARWEWDGVRFELWQWSSALESNQRSCVLLVEAGDERLLLTGDIDSHAE
RALLDGPLAVPVQWLAAPHHGSRSSSSMLLLSRLKPHSVLISRGQGNAFGHPHPRVLARYRRLGMAIYDSAEQGAIRLQL
GAFEAPRLQAGQRRYWRDPPSAGPWP

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=450916 HQ912_RS09110 WP_173406691.1 2069554..2071794(+) (comA) [Pseudomonas sp. MPDS]
ATGCGCACAGGGATGGTCGCGCTTGCACTCGGGCTGCTGACCCCGGTTTTTTGCCCGGCGCTGCCGCCGCTGTGGCTGAT
TGCGGTCATGCCTGTGCTGGCGCTGATGGTTTTGCCGTTTCGAACTCATCCGCTGGGTTTTTTCCTGATCGGGCTGGCTT
GGGCGTGTCTGTCGGCGCAACTGGCCCTGGACGATCGGTTGCCTGCCGCGCTGGATGGAGAAACCCGCTGGCTCGAAGGG
CGCGTCGTCGGTTTACCGCAATATAACGAAGGTGTGGTGCGCTTTGAACTGACCGATGCCCATTCCCGCCGCACACGGCT
GCCGTCGTCGATGCGCCTGGCCTGGTTCGGTGGACCGCCTGTGAGCAGCGGCGAACGTTGGCGATTGGCGGTAAAGCTCA
AACGCCCCACCGGGCTACTGAACCCCCATGGCTTCGATTACCAGGCCTGGCTGTTGAGCCGCGGCATCGGCGCGACTGGC
ACGGTCAAGGACGGTCATCTCCGGCAACCTGCCCAAGGTGCCTGGCGCGACGGCGTGCGTCAGGCGCTGGCGCAAGTCGA
CGCCCAGGGCCGCTCCGGGGCGCTGGCGGCATTGGTCCTGGGGGACGGAGCTGGGCTGAGTCGTGATGACTGGCAGGTAC
TGCAAGACACCGGTACGGTCCATCTGCTGGTGATCTCCGGGCAGCACATCGGCCTGCTTGCCGCACTGGTGTACCTGCTG
GTGGCAGGTGCGGCGCGCTATGGCATGTGGCCGGTGCGTCTGCCGTGGCTACCTTGGGCCTGCGCTCTGGCCTTTATCGC
AGCCTTGGGTTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGGCGCGCTTGCGCGATGATCGGCCTGGTGCTGCTGT
GGCGTTTGCGTTACCGGCATCCGGACCCCTGGTGGGCGTGGCTGCTGGCTTTCAATGGGGTGCTGGTGTTCGATCCATTG
GCCAGCCTGCGGCCAGGGTTCTGGCTGTCGTTCGCCGCGGTGGCGATCCTGATGTTTACTTTCGGCGCACGCTTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAATGGCTGGTGGCAGTCGGACTGTGCCCGATCCTGTTGATATTGGGTT
TGCCGATCAGCCTCAGCGGGCCTCTGGTGAACCTGGTGGCGGTGCCTTGGGTCAGCCTGCTGGTGTTGCCGCCGGCGCTG
CTCGGTACGGCGTTGTTGCCGATGCCGTTCGTGGGTGAAGGGCTGCTTTGGATCGCCGGCGGGTTGCTCGATCTGCTCTT
CAAGGGGCTGGCGCTGGTGGCCGGGCGAATACCCGCATGGGTGCCTGCGGCTATCCCCCTGTGGGTGTGGTGCATGGCCG
CTCTGGGGGCTTTGTTACTGTTGCTGCCCAAAGGCGTGCCACTGCGGGTACTGGGATGGCCCATGGTACTGCTGGTGGTT
TTCCCTCCGAGGGAGGATGTGCCTCCGGGGCAGGCCGAAATCTGGCAACTGGACGTGGGTCAAGGGTTGGCGGTGCTGGT
ACGCACCCGTCATCATGCCTTGCTTTACGACGCGGGGCCGCGCTTTGGCGAGGCCGACGCGGGTGAGCGCGTGGTGCTGC
CGACCCTGCGCAAGCTGGGTGTCGCCGGGTTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGCGGCGCC
CAAGCCGTGCGCAATGGCTTGCCAACGGTCCGGGTGGTCAGTGGCGACCCCGCCGCGTTGCCTGCCACCCTGCAGGCAGA
GGCGTGCGACAGTGGCGCGCGCTGGGAGTGGGACGGGGTCAGGTTCGAGCTGTGGCAATGGTCATCTGCCCTTGAAAGCA
ACCAGCGGTCCTGCGTTCTGCTGGTCGAGGCTGGCGATGAGCGGTTGTTGCTCACCGGCGACATCGATAGCCATGCCGAG
CGCGCGTTGCTCGACGGGCCCCTGGCCGTGCCGGTCCAGTGGCTGGCGGCGCCCCATCACGGTAGCCGCAGTTCATCGTC
GATGTTGCTGTTGTCGCGGCTCAAACCCCATTCGGTGTTGATCTCCCGCGGCCAGGGCAATGCGTTCGGCCATCCTCATC
CGCGGGTGCTGGCTCGCTATCGCCGCTTGGGCATGGCGATCTACGACAGTGCCGAACAGGGTGCCATTCGTCTGCAACTG
GGGGCTTTCGAAGCACCGCGCCTTCAGGCCGGCCAACGGCGCTACTGGCGCGACCCGCCGTCTGCGGGACCATGGCCGTA
A

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-165)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-667)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.034

95.979

0.586