Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I6G23_RS02265 Genome accession   NZ_CP065735
Coordinates   181509..182264 (-) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis strain FDAARGOS_866     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 176509..187264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G23_RS02245 (I6G23_02245) - 176968..177948 (+) 981 WP_010905076.1 alpha-ketoacid dehydrogenase subunit beta -
  I6G23_RS02250 (I6G23_02250) - 177941..179539 (+) 1599 WP_010905075.1 2-oxo acid dehydrogenase subunit E2 -
  I6G23_RS02255 (I6G23_02255) lpdA 179733..181151 (+) 1419 WP_010905074.1 dihydrolipoyl dehydrogenase -
  I6G23_RS02260 (I6G23_02260) - 181222..181395 (-) 174 WP_021214949.1 helix-turn-helix domain-containing protein -
  I6G23_RS02265 (I6G23_02265) recO 181509..182264 (-) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  I6G23_RS02270 (I6G23_02270) - 182363..183538 (-) 1176 WP_010905073.1 pyridoxal phosphate-dependent aminotransferase -
  I6G23_RS02280 (I6G23_02280) - 184002..184523 (-) 522 WP_010905072.1 GNAT family N-acetyltransferase -
  I6G23_RS02285 (I6G23_02285) - 184733..184975 (+) 243 Protein_189 SulP family inorganic anion transporter -
  I6G23_RS02290 (I6G23_02290) - 185075..186222 (+) 1148 WP_120784960.1 IS3 family transposase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=450890 I6G23_RS02265 WP_003132217.1 181509..182264(-) (recO) [Lactococcus lactis strain FDAARGOS_866]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=450890 I6G23_RS02265 WP_003132217.1 181509..182264(-) (recO) [Lactococcus lactis strain FDAARGOS_866]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534