Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   I6G42_RS07010 Genome accession   NZ_CP065707
Coordinates   1430151..1433804 (-) Length   1217 a.a.
NCBI ID   WP_038805259.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_885     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1425151..1438804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G42_RS06985 (I6G42_06985) - 1426375..1427160 (-) 786 WP_038805252.1 ribonuclease HII -
  I6G42_RS06990 (I6G42_06990) ylqF 1427147..1427998 (-) 852 WP_000201310.1 ribosome biogenesis GTPase YlqF -
  I6G42_RS06995 (I6G42_06995) mazE 1428214..1428429 (+) 216 WP_038805253.1 type II toxin-antitoxin system PemI/MazE family antitoxin -
  I6G42_RS07000 (I6G42_07000) - 1428413..1428769 (+) 357 WP_038805254.1 type II toxin-antitoxin system PemK/MazF family toxin -
  I6G42_RS07005 (I6G42_07005) - 1428803..1429981 (-) 1179 WP_038805256.1 hypothetical protein -
  I6G42_RS07010 (I6G42_07010) rexA 1430151..1433804 (-) 3654 WP_038805259.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I6G42_RS07015 (I6G42_07015) rexB 1433801..1437076 (-) 3276 WP_038805260.1 ATP-dependent nuclease subunit B Machinery gene
  I6G42_RS07020 (I6G42_07020) - 1437183..1437602 (-) 420 WP_038805261.1 EVE domain-containing protein -
  I6G42_RS07025 (I6G42_07025) - 1437595..1438056 (-) 462 WP_038805262.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 140307.76 Da        Isoelectric Point: 5.0483

>NTDB_id=450867 I6G42_RS07010 WP_038805259.1 1430151..1433804(-) (rexA) [Streptococcus oralis strain FDAARGOS_885]
MKPISFLTEEEIQKLQEAEASSSKEQKKTAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLTRGVEISQLFISTFT
VKAATELKERLEKKISQQIQESNDVDLKQHLGRQLADLPNATIGTMDSFTQKFLGKHGYLIDIAPNFRILQNESEQLLLK
NEVFHQVFEDHYQGENKEKFGSLVKNFAGRGKDERGLRQQVYKIYDFLQSTSSPKKWLNESFLKGFEKADFTNEKEKLTE
QIKQALWDLESFFRYHLDNDAKEFPKAAYLENVQLVLDEIGSLNQESDSQAYQAVLARVVAISKEKNGRALANSSRKAEL
KPLADAYNEERKAQFVKLGRLADQITILDYQERYHEDTWELAKTFQTFMSDFVEAYRERKRQENAFEFADISHYTIEILE
NFPQVREAYQERFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNPQEGKLIL
LKENFRSSSEVLSATNDVFARLMDQEVGEINYDSMHQLVFANTKLTPNPDNKAEFLLYDKNDSGQEEEESDADTKLTGEM
RLVIKEILKLHQEKGVAFKEIALLTSSRSRNDQILLALSEYGIPVKIDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALV
ALMKSPMFGFDEDELARLSLQKIEDKVQENLYEKLVNAQKQAASQKELIHTDLAEKLNQFMDILDSWRLYAKTHSLYDLI
WKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHK
SKGLEFPYVFILNMDQDFNKQDSMSEVILGRQNGLGIKYIAKVETGAVEAHYPKTIKLSIPSLTYTQNEEELQLASYSEQ
MRLLYVAMTRAERKLYLVGKGSREKLEAKEYPAANNGKLDGNTRLQARNFQDWIWAISKVFAKDNLNFSYRFIGEDQLTR
EAIGELENKSPLQDSSQSSNRQSETIKEALEMLKEVEVYNTLHREAIELPSVQTPSQIKKFYEPVMDMEGVQIAGQTQST
EKKICFDLPDFSTKEKVTGAEIGSATHELMQRIDLSQRPTLASLTETLKQVQTSQVVRDKINLSKILAFFDTALGQEILA
NTGHLYREQPFSMLKRDQKSQEDLVVRGILDGYLLYEDRIILFDYKTDRYDEPSQLIDRYRGQLALYGEALSRAYSIENI
EKYLILLGKDEVQVIKV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=450867 I6G42_RS07010 WP_038805259.1 1430151..1433804(-) (rexA) [Streptococcus oralis strain FDAARGOS_885]
ATGAAGCCCATTTCCTTTTTAACTGAGGAAGAGATTCAAAAACTGCAAGAAGCAGAAGCGAGTTCAAGCAAGGAACAGAA
GAAAACCGCCGAGCAAATCGAAGCCATTTATACGGCAGGGCAAAATATCCTTGTTTCAGCGTCTGCTGGTTCTGGGAAAA
CATTTGTTATGGCAGAGCGTATTCTGGACCAATTAACACGTGGCGTGGAAATCAGCCAACTCTTTATCTCGACCTTTACC
GTCAAGGCTGCTACAGAACTCAAGGAACGTTTGGAGAAAAAAATCAGCCAACAAATTCAAGAAAGTAACGATGTCGATCT
CAAACAACACTTGGGACGTCAATTGGCAGATCTACCAAACGCTACCATCGGAACCATGGACTCTTTCACACAAAAATTCC
TTGGCAAACATGGCTATCTGATTGATATCGCACCAAACTTCCGTATTCTGCAAAATGAAAGTGAACAGTTACTCTTAAAG
AACGAAGTTTTTCATCAGGTTTTTGAAGACCATTACCAAGGTGAAAATAAAGAGAAATTTGGTAGCTTGGTAAAGAACTT
TGCTGGGCGAGGTAAGGATGAACGAGGTCTACGCCAGCAAGTCTACAAAATCTATGATTTTCTCCAATCCACTAGCAGTC
CCAAAAAATGGCTGAACGAGTCTTTTCTCAAAGGGTTTGAAAAAGCTGACTTTACAAATGAGAAAGAGAAACTAACTGAG
CAAATCAAGCAGGCGCTTTGGGACTTGGAAAGTTTCTTCCGTTATCATCTGGATAACGATGCCAAGGAGTTTCCCAAAGC
TGCCTATTTAGAAAATGTGCAGTTGGTTCTGGATGAAATTGGCTCCTTAAATCAAGAGTCCGATAGTCAGGCTTATCAAG
CAGTGCTTGCGCGTGTTGTCGCCATCTCGAAAGAGAAAAACGGTCGGGCTCTAGCTAACTCCAGTCGTAAGGCCGAATTG
AAGCCACTGGCTGATGCCTACAACGAAGAAAGAAAGGCCCAGTTTGTTAAACTAGGAAGACTAGCAGACCAGATAACCAT
TCTCGACTACCAAGAGCGTTATCATGAAGACACCTGGGAGCTAGCTAAAACCTTCCAAACCTTTATGAGTGATTTTGTAG
AGGCATATCGAGAACGTAAACGCCAGGAAAATGCCTTTGAATTCGCTGATATCAGCCATTATACCATTGAGATTTTAGAG
AATTTCCCGCAAGTTCGTGAGGCTTATCAGGAACGCTTCCACGAAGTCATGGTCGATGAGTATCAGGATACCAACCACAT
TCAAGAACGGATGCTGGAATTGCTGTCGAATGGTCACAATCGCTTTATGGTGGGAGATATCAAGCAGTCCATCTACCGAT
TCCGTCAGGCAGACCCGCAGATTTTCAATGAAAAATTTCAACGCTATGCGCAAAATCCTCAAGAAGGAAAACTGATTTTG
CTCAAGGAAAATTTCCGTAGTAGTTCAGAAGTGCTGTCAGCAACCAATGATGTTTTTGCACGCCTTATGGACCAAGAGGT
CGGCGAAATCAACTATGACAGCATGCACCAGCTTGTTTTTGCCAATACCAAACTGACTCCCAATCCAGACAACAAGGCAG
AATTTCTCCTCTACGACAAGAACGATAGTGGGCAAGAGGAAGAAGAAAGTGATGCAGACACGAAACTCACAGGAGAAATG
CGCCTAGTTATCAAGGAAATCTTGAAGCTCCATCAGGAAAAAGGTGTTGCCTTCAAAGAAATTGCCCTTTTGACTTCCAG
TCGCAGTCGTAATGATCAGATTCTACTTGCCCTGTCTGAGTACGGGATTCCTGTTAAAATCGACGGTGAGCAAAACAACT
ATCTCCAATCTTTAGAAGTGCAAGTCATGCTGGACACCCTGCGCGTCATTCACAATCCCCTGCAAGACTATGCCTTGGTA
GCACTTATGAAGTCTCCTATGTTTGGTTTTGATGAGGACGAGTTGGCACGCTTGTCCCTTCAGAAAATAGAAGATAAGGT
TCAAGAGAATCTCTATGAGAAACTGGTCAATGCTCAAAAACAAGCAGCTAGCCAGAAAGAGTTAATTCACACAGATCTAG
CAGAAAAATTAAATCAATTCATGGATATCTTGGATTCTTGGCGCTTGTATGCCAAAACCCACTCTCTCTATGACTTGATT
TGGAAGATTTACAACGATCGTTTTTACTATGACTATGTTGGAGCCCTGCCAAACGGTCCAGCTAGACAGGCCAATCTCTA
TGCCCTAGCTCTACGAGCTGACCAGTTTGAAAAGAGTAATTTCAAGGGCTTGTCTCGTTTTATCCGTATGATTGACCAAG
TCCTAGAAGCCCAGCATGACCTCGCAAGCGTAGCCGTCGCACCGCCTAAAGATGCCGTGGAACTTATGACCATTCACAAG
AGCAAAGGATTGGAATTTCCTTACGTCTTTATCCTCAACATGGATCAGGACTTCAACAAGCAAGACTCGATGTCAGAAGT
TATTCTCGGTCGTCAAAATGGGCTTGGTATCAAATACATTGCCAAAGTGGAAACAGGAGCAGTGGAAGCACACTATCCTA
AAACCATCAAACTCTCCATTCCCAGCCTTACCTATACCCAGAATGAAGAAGAATTGCAACTGGCTAGCTATTCAGAGCAG
ATGCGTCTGCTGTATGTTGCCATGACGAGGGCGGAGAGAAAACTTTATCTTGTCGGTAAAGGGTCTCGTGAAAAGCTAGA
AGCCAAGGAATACCCAGCAGCAAACAATGGAAAATTAGATGGCAATACCAGACTGCAAGCAAGAAATTTCCAAGATTGGA
TCTGGGCTATCAGTAAAGTATTTGCCAAGGACAATCTCAACTTTAGCTATCGTTTTATTGGTGAAGACCAGTTGACTAGA
GAAGCTATCGGAGAGTTGGAAAACAAGAGTCCTCTACAAGATAGCTCTCAATCAAGCAACCGTCAGTCAGAGACCATCAA
AGAAGCTTTGGAAATGCTGAAAGAGGTGGAAGTTTATAATACTCTTCACCGTGAAGCCATTGAACTACCAAGTGTTCAAA
CCCCAAGTCAAATCAAGAAATTCTACGAACCCGTTATGGATATGGAAGGGGTACAAATTGCTGGTCAAACTCAATCAACT
GAGAAGAAAATCTGCTTTGATTTACCAGATTTTTCAACTAAAGAAAAGGTAACTGGAGCTGAGATTGGTAGTGCAACCCA
CGAACTCATGCAGAGAATTGACCTCAGCCAGCGACCAACGCTTGCTAGCCTGACAGAAACTCTCAAACAAGTTCAAACTA
GCCAAGTTGTCAGAGACAAGATCAATCTTTCTAAAATTCTCGCATTCTTTGACACAGCACTTGGTCAGGAAATTCTCGCT
AATACCGGCCATCTCTACCGCGAGCAACCTTTTTCTATGCTCAAGCGGGACCAAAAAAGTCAGGAAGACCTTGTTGTTCG
TGGGATCTTGGACGGCTATCTACTTTACGAGGACAGAATTATTCTTTTCGACTATAAGACAGACCGTTATGATGAACCAA
GCCAACTCATAGACCGCTATCGTGGCCAGTTAGCCCTATACGGTGAGGCCTTATCACGAGCCTATTCGATTGAAAACATT
GAAAAATACTTGATTTTGCTCGGCAAAGATGAGGTTCAAGTTATAAAAGTATAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1055-1194)

UvrD-like helicase C-terminal domain (UvrD_C)

(479-897)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

91.783

100

0.918