Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I6G42_RS04705 Genome accession   NZ_CP065707
Coordinates   958659..960440 (+) Length   593 a.a.
NCBI ID   WP_038804894.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_885     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 953659..965440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G42_RS04685 (I6G42_04685) metA 954250..955194 (+) 945 WP_038804889.1 homoserine O-acetyltransferase MetA -
  I6G42_RS04690 (I6G42_04690) - 955203..955880 (+) 678 WP_038804890.1 DnaD domain-containing protein -
  I6G42_RS04695 (I6G42_04695) tpiA 955977..956735 (+) 759 WP_038804892.1 triose-phosphate isomerase -
  I6G42_RS04700 (I6G42_04700) rcrP 956914..958650 (+) 1737 WP_038804893.1 ABC transporter ATP-binding protein Regulator
  I6G42_RS04705 (I6G42_04705) rcrQ 958659..960440 (+) 1782 WP_038804894.1 ABC transporter ATP-binding protein Regulator
  I6G42_RS04710 (I6G42_04710) - 960589..961107 (+) 519 WP_038804896.1 Dps family protein -
  I6G42_RS04715 (I6G42_04715) - 961317..961655 (+) 339 WP_001061600.1 zinc ribbon domain-containing protein YjdM -
  I6G42_RS04720 (I6G42_04720) - 961658..962281 (+) 624 WP_038804898.1 Pr6Pr family membrane protein -
  I6G42_RS04725 (I6G42_04725) - 962394..963545 (+) 1152 WP_038804899.1 MFS transporter -
  I6G42_RS04730 (I6G42_04730) truA 963642..964391 (+) 750 WP_038804900.1 tRNA pseudouridine(38-40) synthase TruA -
  I6G42_RS04735 (I6G42_04735) - 964381..965154 (+) 774 WP_038804901.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 66653.04 Da        Isoelectric Point: 5.7582

>NTDB_id=450844 I6G42_RS04705 WP_038804894.1 958659..960440(+) (rcrQ) [Streptococcus oralis strain FDAARGOS_885]
MKTQSSLARLWSYLKAYRFSVFFAVFLKVLSVVMSVLEPFVLGLAITELTKNLLDMAKGLSGASINTGYIGTVLIIYLFR
GLLYELGSYYSNYFMTNAVQSMTQDLRNEMTEKINRIPVSFFDKHQFGDLLGRFTSDVETVSNALQQSFLQIVNAVLTIV
LVMGMVLYLNFQLALVVILSIPVTYFGARSILKRSQPYFKEQAAILGRMNGYVQENLTGFNVLKLYGREETSHKEFSEIT
DDLQRVGFKASFISGLMMPALHVVSDLTYLIVAVLGGLQVIAGRLTVGNMQAFVQYVWQVSQPIQNITQLAGQMQSAKSS
LDRIFDILDETEEVKGEELEILEPLTGQVTFQHVDFQYVENKPLIRDFNLEVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTAGAILVDGQDIRQLSRQDYRRQFGMVLQDAWLYEGTIKENLRFGNLDASDEEIIEAAKAANVDHFIRTLPGGYNMEMN
QESSNISLGQKQLLTIARALLANPKILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLQAKGFYYNLYQSQFSSKSDQVS

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=450844 I6G42_RS04705 WP_038804894.1 958659..960440(+) (rcrQ) [Streptococcus oralis strain FDAARGOS_885]
ATGAAAACACAATCTAGTTTGGCTCGTTTGTGGAGCTATTTGAAAGCCTACCGTTTTTCTGTCTTTTTTGCAGTCTTTCT
AAAAGTTTTGAGTGTGGTCATGAGTGTCTTGGAGCCTTTTGTCTTGGGGCTGGCCATTACGGAGTTGACAAAAAACCTCT
TAGATATGGCTAAGGGCCTTTCAGGTGCTAGTATCAATACTGGCTACATCGGAACGGTTTTAATCATTTACCTCTTTAGA
GGTCTCTTGTATGAACTTGGGTCTTATTATTCCAACTATTTCATGACTAATGCGGTCCAGTCCATGACCCAAGATCTGCG
AAATGAAATGACTGAAAAAATCAATCGTATCCCTGTATCTTTCTTTGACAAACACCAATTTGGTGATTTATTGGGACGCT
TTACCAGTGACGTTGAGACAGTATCCAACGCTCTTCAACAGTCTTTTCTCCAAATTGTCAATGCCGTTTTGACGATTGTC
CTCGTGATGGGAATGGTTTTATACTTGAACTTCCAACTGGCCCTTGTAGTGATTCTATCCATCCCAGTGACTTATTTCGG
TGCCAGAAGTATCTTGAAACGTTCTCAGCCTTATTTTAAAGAACAGGCGGCTATTTTAGGACGGATGAATGGCTATGTGC
AGGAAAATCTTACAGGTTTTAATGTTTTGAAACTCTATGGTCGTGAGGAAACTTCTCATAAAGAGTTTTCTGAGATTACG
GACGACCTCCAACGTGTTGGCTTTAAAGCTAGCTTTATCTCTGGACTCATGATGCCAGCCCTTCATGTCGTATCAGACTT
GACCTATCTGATCGTTGCAGTTCTTGGTGGTTTGCAGGTTATTGCAGGTCGTTTGACAGTAGGGAATATGCAGGCTTTTG
TTCAGTATGTCTGGCAGGTTAGCCAGCCTATCCAAAACATCACACAACTTGCGGGTCAAATGCAAAGTGCCAAGTCTTCG
TTAGACCGCATCTTCGATATCTTAGATGAGACAGAGGAAGTCAAGGGAGAAGAACTCGAAATCCTTGAACCCTTAACAGG
TCAGGTGACCTTCCAACATGTTGACTTCCAGTATGTTGAAAACAAACCATTGATTCGAGACTTTAATCTAGAAGTTCAAC
CGGGAGAGATGGTGGCGATTGTTGGTCCTACTGGAGCTGGTAAGACGACCTTGATCAATCTACTCATGCGTTTTTATGAT
GTTACAGCAGGTGCAATCTTGGTTGACGGCCAGGATATTCGCCAGTTGTCACGACAAGACTACCGCCGTCAGTTTGGGAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACTATCAAAGAAAATCTACGTTTTGGAAATCTTGACGCCAGTGATGAAG
AAATAATAGAAGCTGCCAAAGCAGCAAATGTAGACCACTTTATTCGAACTCTTCCTGGTGGTTACAACATGGAGATGAAT
CAAGAGTCCAGTAATATTTCCCTTGGGCAAAAACAACTCTTGACCATCGCGCGTGCTCTCCTAGCCAATCCTAAAATTCT
CATTCTGGATGAAGCGACTTCCTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAAGCTATGAAACGCTTGATGAAGG
GAAGAACCAGCTTTGTCATCGCCCATCGTCTTTCGACCATTCAAGAAGCGGACAAAATTCTCGTTCTTAAGGATGGACAG
ATTATTGAGCAGGGAAACCATGAAAGCTTGCTCCAAGCAAAAGGCTTTTATTATAATCTTTATCAAAGCCAATTTTCGAG
CAAATCTGATCAAGTCAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.919

99.831

0.438