Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   I6G42_RS04700 Genome accession   NZ_CP065707
Coordinates   956914..958650 (+) Length   578 a.a.
NCBI ID   WP_038804893.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_885     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 951914..963650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G42_RS04670 (I6G42_04670) rplA 952236..952925 (+) 690 WP_038804886.1 50S ribosomal protein L1 -
  I6G42_RS04675 (I6G42_04675) - 952999..953436 (+) 438 WP_038804887.1 GNAT family N-acetyltransferase -
  I6G42_RS04680 (I6G42_04680) - 953556..954068 (+) 513 WP_038804888.1 adenine phosphoribosyltransferase -
  I6G42_RS04685 (I6G42_04685) metA 954250..955194 (+) 945 WP_038804889.1 homoserine O-acetyltransferase MetA -
  I6G42_RS04690 (I6G42_04690) - 955203..955880 (+) 678 WP_038804890.1 DnaD domain-containing protein -
  I6G42_RS04695 (I6G42_04695) tpiA 955977..956735 (+) 759 WP_038804892.1 triose-phosphate isomerase -
  I6G42_RS04700 (I6G42_04700) rcrP 956914..958650 (+) 1737 WP_038804893.1 ABC transporter ATP-binding protein Regulator
  I6G42_RS04705 (I6G42_04705) rcrQ 958659..960440 (+) 1782 WP_038804894.1 ABC transporter ATP-binding protein Regulator
  I6G42_RS04710 (I6G42_04710) - 960589..961107 (+) 519 WP_038804896.1 Dps family protein -
  I6G42_RS04715 (I6G42_04715) - 961317..961655 (+) 339 WP_001061600.1 zinc ribbon domain-containing protein YjdM -
  I6G42_RS04720 (I6G42_04720) - 961658..962281 (+) 624 WP_038804898.1 Pr6Pr family membrane protein -
  I6G42_RS04725 (I6G42_04725) - 962394..963545 (+) 1152 WP_038804899.1 MFS transporter -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64994.34 Da        Isoelectric Point: 6.2657

>NTDB_id=450843 I6G42_RS04700 WP_038804893.1 956914..958650(+) (rcrP) [Streptococcus oralis strain FDAARGOS_885]
MLYIWSYLKKYPKWLFLDFFGAIFFVIVNLGLPTVLARMIDEGVNKGNEQQLYIWAAIMLMIILCGTLGRIVLAYAASKL
TTNMVKDMRDDLYAKLQEYSHHEYEKIGVSSLVTRITSDAFVLMQFAEQTLKLGVITPMMMLSSILMIFLTSPSLAWIVA
FAVPFLAVVVIYVAVKTRPLSEKQQATLDKINQYARENLMGLRVIRAFAREEFQEERFAGQNAVYAANSNRLFKLTGLTE
PLFVQIIIAMIVAIVWFALDPVKQGSLQIGDLVAFIEYSFHALLSFLFLSNLFTMYPRTAVSSERLKEVMDMPISIDPNE
GGVRETATHGYLEFENVTFAYPGETENPVLHNISFSAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGKIKVDGIDVRD
YRLKSLRQKIGFIPQKALLFTGTIAENIRYGKEDASHKDLHQAADVAQAKDFIESREEGFATHLAEGGSNLSGGQKQRLS
IARAVIKNPDIYIFDDSFSALDYRTDAILRRRLKEVTQNATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMETND
IYREIAESQLKNASLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=450843 I6G42_RS04700 WP_038804893.1 956914..958650(+) (rcrP) [Streptococcus oralis strain FDAARGOS_885]
ATGCTCTATATTTGGTCTTATTTGAAAAAATATCCCAAGTGGTTATTCTTGGATTTCTTTGGAGCTATTTTCTTTGTTAT
CGTCAATCTTGGACTGCCAACTGTTCTGGCTCGGATGATTGATGAAGGTGTGAATAAAGGGAATGAACAGCAATTGTATA
TTTGGGCCGCAATCATGCTGATGATTATCCTATGTGGAACCTTGGGGCGTATAGTCTTAGCCTACGCTGCTAGTAAGCTA
ACGACCAATATGGTCAAGGATATGAGAGATGATCTCTATGCCAAATTACAAGAGTATTCTCATCATGAATATGAAAAGAT
AGGAGTATCTTCACTGGTTACTCGTATTACCAGTGATGCCTTTGTTCTTATGCAGTTTGCAGAACAGACCTTAAAACTGG
GTGTCATCACTCCCATGATGATGCTGTCTAGTATTTTAATGATCTTTTTGACCAGCCCGTCATTAGCTTGGATAGTGGCT
TTTGCAGTACCTTTCTTAGCCGTGGTGGTCATTTATGTAGCGGTCAAGACTCGACCATTATCAGAGAAACAGCAGGCTAC
CTTAGATAAGATAAATCAATATGCTCGTGAAAATCTAATGGGACTCCGTGTCATTCGTGCCTTTGCTCGTGAGGAGTTTC
AAGAGGAACGCTTTGCAGGACAAAATGCGGTCTATGCAGCTAATTCCAATCGTCTGTTTAAACTAACCGGTCTGACAGAA
CCCTTGTTTGTTCAGATTATCATTGCCATGATTGTGGCTATTGTCTGGTTCGCTCTGGATCCTGTCAAACAGGGTAGTTT
GCAAATTGGGGATCTAGTAGCCTTTATCGAATATAGTTTCCACGCTCTCTTGTCCTTCCTTTTCCTATCCAATCTCTTCA
CCATGTACCCTCGTACAGCCGTTTCGAGTGAACGTTTGAAAGAAGTCATGGATATGCCGATTTCTATTGATCCAAATGAA
GGAGGCGTTAGAGAGACAGCAACCCACGGCTATTTGGAATTTGAAAATGTCACCTTTGCCTATCCCGGTGAGACGGAAAA
TCCTGTTTTGCACAACATTTCTTTCAGCGCTAAACCAGGTGAAACCATTGCCTTTATCGGATCGACCGGATCTGGTAAAT
CCTCTCTTGTGCAATTGATTCCTCGTTTTTACGATGTCACGCTTGGGAAAATCAAAGTTGATGGTATCGATGTGAGAGAT
TATCGCCTCAAGTCTCTCCGTCAAAAGATTGGATTTATCCCGCAGAAGGCCTTGCTCTTTACAGGAACTATCGCTGAGAA
TATTCGCTATGGGAAGGAAGATGCTAGTCACAAAGATTTACATCAGGCAGCGGACGTGGCGCAAGCCAAAGATTTTATCG
AAAGCCGAGAAGAAGGCTTTGCGACCCATCTAGCTGAAGGCGGAAGCAACCTTTCTGGAGGACAGAAACAACGCCTCTCA
ATTGCCCGAGCGGTTATAAAGAATCCGGATATCTATATTTTTGACGATTCCTTCTCAGCCTTGGATTATCGCACGGATGC
TATTTTACGCCGTCGTCTCAAGGAAGTAACACAGAATGCTACAGTTTTAATTGTCGCTCAACGTGTCGGAACCATCATGG
ATGCGGACCAGATTATCGTTCTTGATAAAGGGGAAATCGTGGGTCGCGGTCGACATGAGGAATTGATGGAAACCAATGAT
ATCTATCGTGAGATTGCTGAGTCGCAGTTGAAAAATGCATCGCTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(16-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.483

93.772

0.37