Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I6G42_RS02370 Genome accession   NZ_CP065707
Coordinates   469278..470048 (+) Length   256 a.a.
NCBI ID   WP_038804304.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_885     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 464278..475048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G42_RS02345 (I6G42_02345) - 464545..465039 (+) 495 WP_038804370.1 beta-class carbonic anhydrase -
  I6G42_RS02350 (I6G42_02350) - 465253..466221 (+) 969 WP_038804308.1 ribose-phosphate diphosphokinase -
  I6G42_RS02355 (I6G42_02355) - 466341..466778 (+) 438 WP_038804307.1 CoA-binding protein -
  I6G42_RS02360 (I6G42_02360) - 466953..467963 (-) 1011 WP_038804306.1 YeiH family protein -
  I6G42_RS02365 (I6G42_02365) - 468112..469281 (+) 1170 WP_038804305.1 pyridoxal phosphate-dependent aminotransferase -
  I6G42_RS02370 (I6G42_02370) recO 469278..470048 (+) 771 WP_038804304.1 DNA repair protein RecO Machinery gene
  I6G42_RS02375 (I6G42_02375) plsX 470045..471037 (+) 993 WP_038804303.1 phosphate acyltransferase PlsX -
  I6G42_RS02380 (I6G42_02380) - 471042..471278 (+) 237 WP_000136453.1 acyl carrier protein -
  I6G42_RS02385 (I6G42_02385) - 471724..471867 (+) 144 WP_038804302.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  I6G42_RS02390 (I6G42_02390) - 471883..472041 (+) 159 WP_038804301.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  I6G42_RS02395 (I6G42_02395) - 472425..472580 (+) 156 WP_000732133.1 hypothetical protein -
  I6G42_RS10005 - 472619..472831 (+) 213 WP_038804300.1 hypothetical protein -
  I6G42_RS02400 (I6G42_02400) - 472912..473091 (+) 180 WP_038804299.1 hypothetical protein -
  I6G42_RS10010 - 473490..473684 (+) 195 WP_038804298.1 hypothetical protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29859.26 Da        Isoelectric Point: 4.9119

>NTDB_id=450808 I6G42_RS02370 WP_038804304.1 469278..470048(+) (recO) [Streptococcus oralis strain FDAARGOS_885]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEEGLDYQVLTNIFEIQILTRFGISLNFNECIFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPEIKQDLRKFIDQIYEEYVGIHLKSKKF
IDSLADWGQLLKEEDK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=450808 I6G42_RS02370 WP_038804304.1 469278..470048(+) (recO) [Streptococcus oralis strain FDAARGOS_885]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGTAATTTTCGTGAGGACGACAAGTTAGTCAAGATTTT
TACCGAGCAGGCTGGCAAGCGCATGTTTTTCGTCAAACACGCTGGTCAGTCCAAACTAGCTCCGGTTATTCAGCCCTTGG
TGTTGGCGCGATTTCTCTTACGAATCAATGATGATGGGCTCAGCTATATCGAGGACTACCATGAGGTGATGACCTTTCCT
AAGATTAATAGTGATCTCTTTGTCATGGCTTATGCGACCTATGTTGCTGCTCTTGCAGATGCTAGTTTGCAGGATAACCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGAGGGTTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATCTTGACCCGATTTGGGATTAGCCTTAATTTTAATGAGTGTATCTTTTGCCATCGGGTTGGT
CAGGCCTTTGACTTTTCTTTTAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
GAATCCCAATATCCCTTATCTTCTCAATCAATTTCAAGCCATTGATTTTGAGACCTTGGAGACCATTTCGCTCAAGCCTG
AAATCAAGCAAGACTTGCGCAAGTTTATAGATCAAATCTACGAAGAGTATGTTGGAATTCACCTAAAATCAAAGAAATTC
ATTGATTCCCTGGCAGACTGGGGACAATTACTAAAAGAGGAAGACAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

96.094

100

0.961