Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   I6G42_RS01495 Genome accession   NZ_CP065707
Coordinates   303028..303951 (-) Length   307 a.a.
NCBI ID   WP_038804712.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_885     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 298028..308951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G42_RS01470 (I6G42_01470) - 298490..300520 (-) 2031 WP_068981907.1 ATP-binding cassette domain-containing protein -
  I6G42_RS01475 (I6G42_01475) - 300513..301094 (-) 582 WP_038804706.1 hypothetical protein -
  I6G42_RS01480 (I6G42_01480) - 301103..301795 (-) 693 WP_038804708.1 ABC transporter permease -
  I6G42_RS01485 (I6G42_01485) - 301819..302682 (-) 864 WP_038804709.1 ATP-binding cassette domain-containing protein -
  I6G42_RS01490 (I6G42_01490) - 302713..302934 (-) 222 WP_038804710.1 hypothetical protein -
  I6G42_RS01495 (I6G42_01495) comR 303028..303951 (-) 924 WP_038804712.1 helix-turn-helix domain-containing protein Regulator
  I6G42_RS01500 (I6G42_01500) - 304106..304966 (-) 861 WP_038804714.1 DUF4299 family protein -
  I6G42_RS01505 (I6G42_01505) - 305690..306049 (-) 360 WP_038804715.1 TfoX/Sxy family protein -
  I6G42_RS01510 (I6G42_01510) - 306059..306475 (-) 417 WP_038804716.1 VOC family protein -
  I6G42_RS01515 (I6G42_01515) - 306532..307335 (-) 804 WP_038804718.1 helix-turn-helix transcriptional regulator -
  I6G42_RS01520 (I6G42_01520) - 307492..308478 (-) 987 WP_038804719.1 rhodanese-related sulfurtransferase -
  I6G42_RS01525 (I6G42_01525) - 308610..308906 (-) 297 WP_038804721.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 35974.40 Da        Isoelectric Point: 4.8429

>NTDB_id=450791 I6G42_RS01495 WP_038804712.1 303028..303951(-) (comR) [Streptococcus oralis strain FDAARGOS_885]
MDIKKEVGKRIRMLREMKHLTRETLCDDETEITVRQLARIESGQSSPSLSKVEYIAYKLGCPISHIVDMDHMILPSEYLI
LKDKLIKFQTYGDDDRIHIKEELFDRVYEHYYDSLPEDEQIAISALQASFDVFVSEDAGFGDALLDEYFEQVKIRKNYSV
NDLLLIKLYLVSCLARPTEYHRELFWELSKKLLRETNSSDLETAYMLKRTVLDSLAVQWMEKSYSTFEPYVKAMNTLMIL
SQDFQNKPIVDMLDAMCTLFHKQDKEKAIYLYDRAVICAQAFGDQVLEARILGEKEKDIKTFEEMKS

Nucleotide


Download         Length: 924 bp        

>NTDB_id=450791 I6G42_RS01495 WP_038804712.1 303028..303951(-) (comR) [Streptococcus oralis strain FDAARGOS_885]
ATGGATATCAAGAAGGAAGTAGGTAAAAGAATCCGAATGTTGCGAGAGATGAAACATCTCACTCGTGAAACTCTTTGTGA
TGATGAAACCGAGATAACAGTACGCCAATTAGCACGGATTGAATCAGGGCAGTCTTCCCCAAGTTTATCTAAGGTAGAGT
ATATAGCTTACAAACTAGGCTGTCCAATTTCACATATAGTAGATATGGATCATATGATTTTACCTTCAGAGTACTTGATA
TTAAAGGATAAACTTATTAAGTTTCAAACTTATGGAGATGATGACAGAATTCATATTAAAGAAGAGTTGTTTGACAGAGT
TTACGAACACTATTATGATAGTCTACCTGAGGATGAGCAGATTGCAATCAGCGCCTTACAAGCTAGTTTTGATGTCTTTG
TAAGTGAAGATGCAGGGTTTGGTGATGCTTTGCTTGATGAGTATTTTGAACAAGTAAAGATAAGAAAAAATTACTCGGTA
AATGATTTGCTTCTCATAAAATTGTACTTGGTTTCGTGTTTAGCAAGACCGACTGAGTATCATCGTGAACTATTTTGGGA
ACTTTCTAAAAAACTTCTGAGAGAAACGAATTCATCCGATTTAGAGACAGCCTATATGTTAAAGAGAACGGTGCTTGATT
CTTTAGCTGTTCAATGGATGGAAAAATCTTACTCCACTTTTGAGCCTTATGTTAAGGCGATGAACACGCTGATGATTTTA
TCGCAGGATTTTCAAAACAAGCCAATTGTTGATATGCTAGATGCTATGTGTACTTTATTTCATAAACAGGATAAGGAAAA
AGCTATCTACTTATATGATAGAGCCGTTATTTGTGCTCAAGCATTTGGAGACCAAGTATTAGAAGCGCGTATATTGGGAG
AAAAAGAAAAAGATATAAAAACTTTTGAGGAAATGAAGAGCTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(11-64)

ComR tetratricopeptide (ComR_TPR)

(75-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.248

97.068

0.362