Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C695_RS04030 Genome accession   NC_018937
Coordinates   848974..850494 (-) Length   506 a.a.
NCBI ID   WP_000611139.1    Uniprot ID   O25480
Organism   Helicobacter pylori Rif1     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 843974..855494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C695_RS04015 (C695_04050) - 845281..845415 (-) 135 Protein_759 restriction endonuclease subunit R -
  C695_RS04020 (C695_04055) - 845552..846847 (-) 1296 WP_000548846.1 restriction endonuclease subunit S -
  C695_RS04025 (C695_04060) - 846889..848949 (-) 2061 WP_001158808.1 heavy metal translocating P-type ATPase -
  C695_RS04030 (C695_04065) comM 848974..850494 (-) 1521 WP_000611139.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C695_RS04035 (C695_04070) def 850500..851024 (-) 525 WP_001185845.1 peptide deformylase -
  C695_RS04040 (C695_04075) clpP 851029..851616 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  C695_RS04045 (C695_04080) tig 851637..852992 (-) 1356 WP_001047731.1 trigger factor -
  C695_RS04050 (C695_04085) - 853104..853940 (-) 837 WP_001037790.1 outer membrane protein -
  C695_RS04055 (C695_04090) hpaA 853969..854751 (-) 783 WP_000646667.1 flagellar sheath lipoprotein HpaA -
  C695_RS04060 (C695_04095) moaC 854870..855346 (-) 477 WP_001131513.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57127.16 Da        Isoelectric Point: 8.3913

>NTDB_id=45079 C695_RS04030 WP_000611139.1 848974..850494(-) (comM) [Helicobacter pylori Rif1]
MINTMFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKIIAPKANEELFSLIPNLQCFFVGHFKE
ALEILQNPETKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVVSRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSVFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSINKVKKVAR
TIADLNACEDIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=45079 C695_RS04030 WP_000611139.1 848974..850494(-) (comM) [Helicobacter pylori Rif1]
ATGATTAACACGATGTTTTGCGCGACCATGCAAAGGGGAGTGGCGGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGGTTAGCTAATAGCTCTATCCAAGAAGCCAAACAGCGGGTTCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCCTCAGATTTGCCTAAATCCGGGAGTCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAGA
TCATTGCGCCTAAGGCCAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGGGCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAACCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAGGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
TGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGTATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGGTTTCAAGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCGACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTGGTGTTATTAGCTTTCAAGCAGCA
AAAGTTAAGGAAACAGAGCGTTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCCTTAAACGCTGAAG
CAAAAAAGTTGTTGGAGCAGGCGGTTGAAAGGTTTAATCTCTCCATGCGCTCTATTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O25480

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

100

100

1
  comM Acinetobacter baylyi ADP1

36.008

100

0.364

Multiple sequence alignment