Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   I6G43_RS05390 Genome accession   NZ_CP065706
Coordinates   1131584..1132654 (-) Length   356 a.a.
NCBI ID   WP_038806112.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1126584..1137654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS05370 (I6G43_05370) - 1126923..1127966 (+) 1044 WP_000752730.1 dihydrolipoamide acetyltransferase -
  I6G43_RS05375 (I6G43_05375) lpdA 1128010..1129713 (+) 1704 WP_038806114.1 dihydrolipoyl dehydrogenase -
  I6G43_RS05380 (I6G43_05380) - 1129772..1130761 (+) 990 WP_038806113.1 lipoate--protein ligase -
  I6G43_RS05385 (I6G43_05385) - 1130865..1131506 (+) 642 WP_000890072.1 hypothetical protein -
  I6G43_RS05390 (I6G43_05390) xerS 1131584..1132654 (-) 1071 WP_038806112.1 tyrosine recombinase XerS Machinery gene
  I6G43_RS05395 (I6G43_05395) - 1132970..1134775 (-) 1806 WP_050562750.1 DNA/RNA non-specific endonuclease -
  I6G43_RS05400 (I6G43_05400) - 1135156..1135593 (-) 438 WP_025170981.1 MepB family protein -
  I6G43_RS05405 (I6G43_05405) - 1135659..1136407 (-) 749 Protein_1055 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41257.36 Da        Isoelectric Point: 9.6031

>NTDB_id=450737 I6G43_RS05390 WP_038806112.1 1131584..1132654(-) (xerS) [Streptococcus oralis strain FDAARGOS_886]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKMADIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDIALFLTLYRGVPNRIDTSSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=450737 I6G43_RS05390 WP_038806112.1 1131584..1132654(-) (xerS) [Streptococcus oralis strain FDAARGOS_886]
ATGAAACGTGAGATTTTACTAGAACGAATCGACAAACTAAAACAAATCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTTGCTGTTCCTTATAGTTTTACAACCTTGTACGAATACCTCAAGGAATACGATCGATTTTTCAGCTGGGTTTTAG
AGTCTGGGATTTCAAATGCTGATAAAATGGCTGATATTCCTTTATCGGTCTTGGAAAACATGTCAAAGAAAGATATGGAA
TCCTTTATCCTTTATCTCCGAGAACGACCTTTGCTGAATGCTAATACAACCAAACAAGGTGTTTCACAGACAACCATCAA
TCGAACCTTATCGGCACTTTCTAGTCTTTATAAGTATCTAACCGAGGAAGTTGAAAACGACCAGGGAGAACCTTATTTCT
ATCGTAATGTAATGAAGAAAGTTTCAACTAAGAAAAAGAAAGAAACCCTTGCTTCCAGAGCTGAAAACATCAAGCAAAAA
CTCTTTCTAGGCGATGAAACAGAAGGTTTTCTGACTTATATCGACCAAGAGTACCCACAACAACTCTCAAATCGCGCTCT
CTCGTCATTCAATAAAAATAAAGAACGTGATTTGGCCATTATCGCCCTTCTCCTAGCATCCGGTGTCCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGACCTTAATCTCAAAATGATGGTCATTGATGTCACACGTAAGGGCGGAAAACGCGATTCT
GTCAATGTCGCTGCCTTTGCCAAGCCTTACCTAGAGAATTATCTAGCAATTCGAAATCAACGCTATAAGACAGAAAAGAC
AGATATAGCTCTCTTTTTGACACTTTACAGAGGTGTTCCCAATCGTATCGATACTTCCAGCGTTGAGAAAATGGTTGCTA
AGTACTCTGAGGACTTCAAAGTCCGTGTAACTCCCCACAAACTGCGCCATACGCTAGCAACTAGACTCTATGATGCAACT
AAATCGCAAGTTTTGGTTAGCCATCAGCTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATCGTCAATGA
TGAACAAAAGAATGCTTTGGATAGTTTGTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(68-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.034

100

0.98