Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   I6G43_RS02430 Genome accession   NZ_CP065706
Coordinates   513444..515810 (-) Length   788 a.a.
NCBI ID   WP_038806395.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 508444..520810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS02405 (I6G43_02405) liaF 509027..509725 (+) 699 WP_000714478.1 cell wall-active antibiotics response protein LiaF -
  I6G43_RS02410 (I6G43_02410) - 509722..510720 (+) 999 WP_000744939.1 sensor histidine kinase -
  I6G43_RS02415 (I6G43_02415) vraR 510731..511363 (+) 633 WP_038806398.1 response regulator Regulator
  I6G43_RS02420 (I6G43_02420) - 511364..512020 (+) 657 WP_038806397.1 DNA alkylation repair protein -
  I6G43_RS02425 (I6G43_02425) tig 512113..513396 (+) 1284 WP_038806396.1 trigger factor -
  I6G43_RS02430 (I6G43_02430) recD/recD2/recDB 513444..515810 (-) 2367 WP_038806395.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6G43_RS02435 (I6G43_02435) lepB 515959..516573 (-) 615 WP_001105833.1 signal peptidase I -
  I6G43_RS02440 (I6G43_02440) rnhC 516577..517458 (-) 882 WP_000146892.1 ribonuclease HIII -
  I6G43_RS02445 (I6G43_02445) zapA 517545..517847 (+) 303 WP_000002027.1 cell division protein ZapA -
  I6G43_RS02450 (I6G43_02450) - 517844..518392 (+) 549 WP_000623533.1 CvpA family protein -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88439.34 Da        Isoelectric Point: 4.5746

>NTDB_id=450706 I6G43_RS02430 WP_038806395.1 513444..515810(-) (recD/recD2/recDB) [Streptococcus oralis strain FDAARGOS_886]
MEVYFSGTIERIIFENPSNFYRILLLDIEDTNAEDFDDFEIIVTGTMTDVIEGEDYTFWGQIVQHSKYGEQLQISRYERA
KPTKKGLVKYFSSSHFKGIGLKTAQKIVDSYGDNTIDEILEHPEKLESIAGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAAELGIESQAPERFRAGLVHSLFQGCMDTGDTYMEA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKRQDLETIQKH
IASVEEELGIEYDSIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQISLIPQTRLERIYRQSEESTIVTLASQIRQGILPVDFTQKKADRSYFEIASGHIPATIEKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPLQKGQVSFEATQCHYRTGDKVIHLVNDAEVNVFNGDLGYITDLIPGKYTESKQDEI
VIDFDGNEVVYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRARSKLILLGELQAFDYAVK
HIGTARKTYLIERFKDLVESSEQTSPVPSQTTNQEESPLSYILTEENWSSIPAMIGITDADLKEIFGK

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=450706 I6G43_RS02430 WP_038806395.1 513444..515810(-) (recD/recD2/recDB) [Streptococcus oralis strain FDAARGOS_886]
ATGGAAGTTTATTTTTCAGGCACTATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTATCGCATTCTCCTCCTAGA
TATCGAAGATACCAATGCGGAGGACTTTGACGATTTTGAAATCATCGTTACAGGAACTATGACTGACGTGATTGAAGGGG
AAGACTACACCTTTTGGGGACAAATCGTTCAACACTCCAAGTACGGAGAACAACTGCAAATCAGCCGTTATGAACGGGCA
AAACCAACTAAAAAAGGGCTAGTTAAGTACTTTTCGAGTAGCCATTTCAAGGGAATTGGTCTCAAAACCGCCCAAAAAAT
CGTTGATAGCTATGGTGACAATACCATAGACGAAATTCTGGAGCATCCTGAAAAGCTAGAAAGCATTGCAGGACTCTCTG
CCAAAAACCGTGAGGCTTTCGTCTCTACCCTCCGTCTCAACTATGGGACAGAAATGGTCTTGGCAAAACTAGCCAACTAC
GGCATTCCCAATAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACTCTTGATGTGGTTGAAAATTATCCCTA
CCAACTGGTTGAAGATATCAAGGGATTGGGCTTTACCATTGCTGACCAACTAGCTGCCGAACTAGGTATCGAAAGCCAAG
CTCCTGAGCGCTTCCGTGCTGGCCTTGTCCATAGTCTCTTTCAGGGCTGTATGGATACGGGCGATACCTACATGGAAGCC
CGAGATTTGCTGGAACAGACCCTGACTCTCCTCGAGTCTTCCCGTCCCGTAGAACTGGACCCCAGCCAAGTTGCCCAAGA
GCTTTCCTACCTCATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAAATCTTTGATAACAGTCTCTTTTTCGCTGAGG
AAGGCATTCGCAGTCATTTGGTTCGTATCCTTGAAAAAGGAAAGCAGAAAAGACAGGATTTAGAAACCATTCAAAAGCAT
ATCGCTAGTGTTGAGGAAGAACTGGGTATTGAGTATGATAGTATCCAAAAACAGGCCATCTGCGACGCTATCCAGAACAA
GGTCTTTATCCTAACAGGTGGACCTGGTACAGGTAAAACGACTGTTATCAATGGGATTATCGCTGTTTATGCCCTCTTAG
AGGGACTTGACCTCAGGAAAAAAAGCAATCTGCCTATCCTTCTTGCTGCTCCAACTGGTCGAGCAGCTCGACGCATGAAT
GAATTAACAGGTTTGCCTAGCGCTACTATACACCGTCATTTGGGGATGACGGGTGACGATGATACCAGCCATCTAGATGA
TTATCTGGATGCCGACTTCATCATCGTGGATGAGTTTTCTATGGTGGACACTTGGCTAGCTAACCAACTCTTCTCCAACA
TCTCTTCTAACAGTAAAATTCTCATCGTAGGTGATAGCGACCAGTTGCCTTCTGTTAGTCCCGGACAAGTTCTGGCTGAC
CTGCTCCAGATATCCCTGATTCCGCAGACGCGCTTAGAAAGGATTTATCGTCAGAGTGAAGAATCAACTATCGTCACCTT
AGCTAGCCAGATTCGACAAGGCATCTTGCCAGTTGACTTTACCCAGAAAAAGGCAGATCGCTCCTACTTTGAAATCGCTA
GCGGCCATATCCCAGCTACGATTGAGAAAATTCTTGGTGCTGCCCTCAGAAGTGGCATTCCGGCTCGTGATATTCAGGTA
TTGGCGCCTATGTATCGAGGAACTGCTGGTATTGACGCCATTAACCAGCTCATGCAAGACCTGCTCAATCCTCTTCAAAA
AGGACAAGTTAGCTTTGAAGCAACTCAGTGTCACTATCGAACAGGGGACAAGGTTATTCACCTAGTCAACGACGCTGAAG
TCAATGTCTTTAATGGAGACCTAGGCTACATCACAGACCTGATTCCTGGAAAATACACCGAGTCTAAACAAGACGAGATT
GTCATTGATTTTGATGGCAATGAGGTTGTCTACCCACGTAACGAATGGTACAAGATTCGCCTGGCCTATGCCATGAGTAT
CCATAAGTCGCAGGGGAGTGAGTTTCCCGTTGTCATCCTGCCCATCACCAGTGCTAGTAGACGTATGCTGGAGCGGAATC
TCATCTATACAGCTATTACACGGGCTAGGAGCAAGCTCATCCTACTAGGCGAATTACAGGCCTTTGACTATGCAGTTAAA
CATATCGGAACTGCCCGTAAGACCTATCTGATTGAGCGCTTCAAGGATCTGGTTGAATCATCTGAACAAACCAGCCCCGT
TCCTAGCCAAACGACAAATCAAGAAGAATCTCCTTTATCCTACATCCTCACCGAGGAAAACTGGTCCAGCATCCCAGCCA
TGATTGGGATTACAGACGCAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(332-522)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.888

95.431

0.4