Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6G43_RS02340 Genome accession   NZ_CP065706
Coordinates   496932..497528 (-) Length   198 a.a.
NCBI ID   WP_000248780.1    Uniprot ID   A0ABW0Y663
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 491932..502528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS02335 (I6G43_02335) pbp1a 494788..496935 (-) 2148 WP_001041843.1 penicillin-binding protein PBP1A -
  I6G43_RS02340 (I6G43_02340) recU 496932..497528 (-) 597 WP_000248780.1 Holliday junction resolvase RecU Machinery gene
  I6G43_RS02345 (I6G43_02345) - 497595..498122 (+) 528 WP_000205313.1 DUF1273 domain-containing protein -
  I6G43_RS02350 (I6G43_02350) gpsB 498192..498521 (+) 330 WP_000146526.1 cell division regulator GpsB -
  I6G43_RS02360 (I6G43_02360) - 499007..500164 (+) 1158 WP_000659722.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  I6G43_RS02365 (I6G43_02365) mapZ 500177..501625 (+) 1449 WP_038806401.1 cell division site-positioning protein MapZ -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23104.56 Da        Isoelectric Point: 9.7126

>NTDB_id=450703 I6G43_RS02340 WP_000248780.1 496932..497528(-) (recU) [Streptococcus oralis strain FDAARGOS_886]
MVNYPHKLSSQKRQVPPSQTKNFANRGMSFEKMINATNDYYLSHGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYDGYYIDFEAKETRQKHAIPMKNFHLHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAIDLIRFYHQDMGQK
SMPLGYIRENGYRIEPGAFPQIPYLEVIKEHLLGGKIR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=450703 I6G43_RS02340 WP_000248780.1 496932..497528(-) (recU) [Streptococcus oralis strain FDAARGOS_886]
ATGGTCAACTATCCACATAAACTTTCATCACAGAAGAGACAAGTACCCCCGTCACAAACTAAAAATTTCGCAAATCGGGG
AATGTCTTTTGAAAAGATGATCAACGCTACGAACGACTACTATTTGTCGCATGGGTTAGCAGTTATTCACAAGAAACCGA
CTCCCATCCAAATCGTACGTGTCGACTATCCCCAACGAAGTCGAGCCAAGATCGTTGAAGCCTACTTTAGACAGGCCTCA
ACGACTGACTATTCAGGGGTTTATGATGGATACTACATCGACTTTGAAGCAAAGGAAACCAGGCAAAAACATGCGATCCC
GATGAAGAATTTCCATCTCCATCAGATCCAACACATGGAACAAGTTCTTGCCCAGCAAGGAATCTGCTTTGTCCTCCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCCATTGACTTGATTCGTTTCTATCATCAAGATATGGGACAAAAG
TCAATGCCACTTGGATATATTCGAGAAAATGGATATAGGATTGAGCCTGGTGCCTTTCCACAGATTCCCTATCTCGAAGT
TATCAAAGAACATTTACTAGGTGGTAAAATAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48

100

0.485