Detailed information NTG0450677

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: HRK02_RS03005
• Genome accession: NZ_CP054085
• Coordinates: 597368..598471 (-)
• Length: 367 a.a.
• NCBI ID: WP_023853086.1
• Uniprot ID: A0AAI9J0F0
• Organism: Bordetella pertussis strain NZ46
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 592368..603471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HRK02_RS02975 (HRK02_02950)	-	592413..593363 (+)	951	WP_005013747.1	IS481-like element IS481 family transposase	-
HRK02_RS02980 (HRK02_02955)	-	593357..593842 (+)	486	Protein_580	ATP-binding cassette domain-containing protein	-
HRK02_RS02985 (HRK02_02960)	phnE	593839..594729 (+)	891	WP_033446133.1	phosphonate ABC transporter, permease protein PhnE	-
HRK02_RS02990 (HRK02_02965)	phnE	594726..595547 (+)	822	WP_010931496.1	phosphonate ABC transporter, permease protein PhnE	-
HRK02_RS03000 (HRK02_02975)	-	595723..597321 (+)	1599	Protein_583	CYTH and CHAD domain-containing protein	-
HRK02_RS03005 (HRK02_02980)	pilA	597368..598471 (-)	1104	WP_023853086.1	signal recognition particle-docking protein FtsY	Machinery gene
HRK02_RS03010 (HRK02_02985)	rsmD	598547..599167 (+)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
HRK02_RS03015 (HRK02_02990)	coaD	599188..599697 (+)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
HRK02_RS03020 (HRK02_02995)	-	599752..600003 (+)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
HRK02_RS03025 (HRK02_03000)	-	600067..601200 (+)	1134	WP_010931494.1	benzoate/H(+) symporter BenE family transporter	-
HRK02_RS03030 (HRK02_03005)	-	601208..601594 (-)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 38499.02 Da
• Isoelectric Point: 6.5148

>NTDB_id=450677 HRK02_RS03005 WP_023853086.1 597368..598471(-) (pilA) [Bordetella pertussis strain NZ46]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPEPQPQQPPEPQPPVAAAPEAPRKASWLSRLKQGLSRTG
QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRA
QPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGR
ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTA
KGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1104 bp

>NTDB_id=450677 HRK02_RS03005 WP_023853086.1 597368..598471(-) (pilA) [Bordetella pertussis strain NZ46]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAGCCCGAGCCGCAGCCGCAACAACCGCCCGAGCCGCAGC
CACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGGCCTGTCGCGCACCGGC
CAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGTCGGCGCTGATCATGGC
CGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAGCGCATCGACGATCCGG
CGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTTCGACCTGGGGCGGGCC
CAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGCTGGCGCATACCTTCCA
GCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAATTGGTCGAATGGGGCA
GCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTCGGTCAATGCCGGACGT
GCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAATTGAAGAA
GATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGA
ACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAAGCTGGACGGCACCGCC
AAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATTGGATCGGCGTGGGCGA
GGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (163-365)

• SRP54-type protein, helical bundle domain (SRP54_N) (83-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.913	94.005	0.507