Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   I6G43_RS00105 Genome accession   NZ_CP065706
Coordinates   21017..23848 (-) Length   943 a.a.
NCBI ID   WP_038805858.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 16017..28848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS00090 (I6G43_00090) spx 16367..16765 (-) 399 WP_000591165.1 transcriptional regulator Spx -
  I6G43_RS00095 (I6G43_00095) mgtA 16900..19560 (-) 2661 WP_000858868.1 magnesium-translocating P-type ATPase -
  I6G43_RS00100 (I6G43_00100) - 19963..21024 (-) 1062 WP_001042873.1 M24 family metallopeptidase -
  I6G43_RS00105 (I6G43_00105) uvrA 21017..23848 (-) 2832 WP_038805858.1 excinuclease ABC subunit UvrA Machinery gene
  I6G43_RS00110 (I6G43_00110) - 23985..24929 (+) 945 WP_038805859.1 magnesium transporter CorA family protein -
  I6G43_RS00115 (I6G43_00115) - 24941..25618 (+) 678 WP_038805860.1 DUF1129 domain-containing protein -
  I6G43_RS00120 (I6G43_00120) - 25634..25981 (+) 348 WP_038805861.1 TfoX/Sxy family protein -
  I6G43_RS00125 (I6G43_00125) - 26302..27336 (+) 1035 WP_038805862.1 S66 peptidase family protein -
  I6G43_RS00130 (I6G43_00130) - 27442..27705 (+) 264 WP_000166112.1 SemiSWEET family transporter -
  I6G43_RS00135 (I6G43_00135) - 27777..28451 (-) 675 WP_000987439.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104047.14 Da        Isoelectric Point: 6.4812

>NTDB_id=450660 I6G43_RS00105 WP_038805858.1 21017..23848(-) (uvrA) [Streptococcus oralis strain FDAARGOS_886]
MQDKIVIHGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMEKPDVDAIDGL
SPAISIDQKTTSKNPRSTVGTTTEINDYLRLLYARVGTPYCINGHGAIKASSVEQIVDKVLELPERQRLQILAPVIRKKK
GQHKSVIEKIQKDGYVRVRVDGEVYDVTGVPELSKSKQHNIDVVVDRIVIKEGIRSRLFDSIEAALRIAEGYVIIDTMDD
SELLFSEHYACPVCGFTVPELEPRLFSFNAPFGSCSECDGLGIKLEVDVDLVVPDASKTLREGALAPWNPISSNYYPNML
EQAMTAFGVDMDKPFEDLSEEDKNLILYGSDGKEFHFHYENEFGGVRDIDIPFEGVVNNIKRRYHETNSDYTRTQMRLYM
NELTCGTCHGYRLNDQALSVRVGGEQGPHIGEISDLSIADHLELVSQLTLSENEAIIARPILKEIKDRLTFLNNVGLNYL
TLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADYLI
DVGPGAGVFGGEIVAAGTPKQVARNSKSITGQYLSGKRAIPVPAERRSGNGRFIEVTGARENNLKNITARFPLGKFIAVT
GVSGSGKSTLINSILKKAIAQKLNRNSDKPGKFKTITGIERVDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVACEVCHGTRYNSETLEVHYKEKNISQVLDMTVNDAVEFF
QHIPKIQRKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSFYILDEPTTGLHTEDIARLLKVLARFVD
DGNTVLIIEHNLDVIKTADHIIDLGPEGGVGGGTIIATGTPEEVAANEASYTGHYLKGKLHHE

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=450660 I6G43_RS00105 WP_038805858.1 21017..23848(-) (uvrA) [Streptococcus oralis strain FDAARGOS_886]
ATGCAAGATAAAATTGTGATTCATGGGGCGCGTGCCCATAACTTAAAAAATATCGATGTGGAGATTCCAAGAGACAAACT
GGTTGTTGTGACTGGTTTGTCAGGTTCTGGGAAATCCAGTCTGGCCTTTGATACCCTCTATGCTGAGGGGCAACGTCGCT
ATGTAGAGAGTCTATCAGCCTACGCTCGCCAGTTCTTGGGCAATATGGAAAAACCAGATGTAGATGCCATTGACGGCCTC
AGCCCAGCTATTTCCATCGACCAGAAAACGACCAGTAAAAACCCTCGTTCGACCGTGGGAACTACGACTGAAATCAATGA
TTATCTGCGTCTCCTCTACGCACGTGTGGGGACGCCTTACTGTATCAACGGGCATGGGGCTATCAAGGCTTCTTCTGTGG
AGCAAATCGTGGATAAGGTCTTGGAATTGCCTGAACGCCAGCGCTTGCAGATTTTGGCCCCTGTCATCCGCAAGAAAAAA
GGCCAACATAAGAGTGTTATCGAGAAGATTCAGAAAGATGGGTATGTCCGCGTCCGAGTGGATGGGGAGGTCTACGATGT
GACCGGAGTACCAGAGCTGTCTAAGAGCAAGCAACACAATATCGATGTCGTGGTTGACCGCATTGTCATCAAGGAGGGCA
TCCGTAGCCGTCTCTTTGATTCAATCGAGGCTGCCCTTCGTATCGCAGAAGGCTATGTGATTATCGACACTATGGACGAT
TCGGAGTTGCTCTTTTCTGAGCACTATGCCTGCCCGGTTTGTGGATTTACCGTACCAGAGTTAGAGCCTCGTCTCTTCTC
CTTTAATGCTCCTTTTGGCTCTTGTAGTGAGTGTGATGGTTTGGGCATCAAGCTGGAGGTGGATGTTGACTTGGTGGTTC
CTGATGCCAGCAAAACTTTGCGCGAGGGAGCCTTGGCACCTTGGAATCCTATCTCATCTAACTACTATCCAAACATGCTC
GAGCAGGCCATGACAGCATTTGGAGTGGATATGGATAAGCCTTTTGAGGACTTGTCAGAAGAAGATAAAAACTTGATTCT
CTACGGCTCAGATGGCAAGGAATTCCATTTCCACTATGAAAATGAATTTGGCGGTGTGCGCGATATTGACATTCCTTTTG
AGGGGGTTGTCAATAATATCAAGCGTCGTTATCATGAGACTAACAGTGATTACACTCGCACCCAGATGCGTCTCTACATG
AATGAGCTGACCTGCGGAACTTGCCATGGCTACCGTCTCAATGACCAGGCCTTGTCTGTTCGTGTAGGTGGCGAGCAAGG
GCCGCATATCGGTGAAATATCGGACCTGTCTATCGCAGACCATTTGGAGTTGGTGAGTCAGCTGACCTTGTCTGAAAATG
AAGCCATCATTGCCCGTCCCATTCTCAAGGAAATAAAGGATCGCTTGACCTTCCTCAATAACGTAGGTCTCAACTATCTG
ACTCTGTCACGTTCGGCAGGAACTCTTTCAGGTGGGGAGAGTCAGCGTATTCGCTTGGCAACCCAGATTGGTTCCAACCT
CTCAGGTGTGCTCTATATTCTGGATGAGCCTTCAATCGGTCTTCACCAGAGGGATAATGACCGACTGATTGCCAGTCTGA
AGAAGATGCGCGATTTAGGAAATACTCTCATCGTGGTGGAACACGACGAAGATACCATGCGCGAGGCGGATTATCTGATT
GATGTCGGCCCTGGTGCTGGTGTTTTTGGTGGGGAGATTGTTGCTGCAGGAACGCCAAAACAGGTGGCTCGCAACAGCAA
ATCTATCACAGGCCAGTACTTATCAGGAAAACGAGCGATTCCAGTGCCAGCAGAGCGCCGTTCCGGAAATGGTCGTTTTA
TCGAAGTGACAGGAGCGCGTGAGAACAACTTGAAAAATATCACCGCTCGTTTCCCATTAGGAAAATTCATTGCGGTGACA
GGTGTGTCAGGTTCAGGGAAATCGACCTTAATCAACAGTATCCTCAAAAAAGCCATTGCTCAAAAACTCAATCGCAACTC
AGACAAGCCTGGTAAGTTTAAAACTATCACAGGGATTGAGCGTGTAGACCGCTTGATTGACATTGACCAGAGCCCTATCG
GACGGACGCCGAGGTCCAACCCAGCTACCTATACGGGAGTTTTTGACGACATCCGTGACCTCTTTGCCCAGACAAATGAG
GCCAAGATTCGAGGCTACAAGAAGGGGCGTTTCAGTTTCAACGTCAAGGGTGGTCGTTGCGAAGCCTGCTCAGGTGACGG
GATTATCAAGATTGAGATGCACTTCTTGCCAGATGTTTATGTTGCCTGTGAAGTTTGCCATGGGACTCGCTACAACAGTG
AAACCCTTGAAGTTCACTACAAGGAAAAAAATATCTCGCAGGTTTTGGACATGACCGTCAACGATGCGGTGGAATTCTTC
CAACATATTCCGAAAATTCAACGCAAACTTCAGACCATCAAGGATGTGGGGCTGGGCTATGTAACGCTAGGGCAACCAGC
TACCACCCTTTCTGGGGGAGAAGCCCAGCGTATGAAGTTGGCTAGTGAACTCCACAAACGCTCGACAGGTAAATCCTTCT
ATATTCTGGATGAGCCGACGACAGGGCTTCATACTGAGGACATCGCTCGCTTGCTTAAAGTCTTAGCTCGCTTTGTCGAC
GATGGAAATACAGTCCTCATCATTGAGCACAATCTGGATGTCATCAAGACGGCAGACCATATTATTGACTTAGGACCTGA
GGGCGGTGTCGGTGGTGGAACCATCATTGCAACAGGAACCCCAGAAGAAGTAGCGGCCAATGAAGCCAGCTACACAGGAC
ACTATTTGAAAGGAAAGTTACATCATGAATAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

ABC transporter (ABC_tran)

(624-860)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

97.879

100

0.979
  uvrA Streptococcus pneumoniae TIGR4

97.879

100

0.979
  uvrA Streptococcus pneumoniae D39

97.879

100

0.979