Detailed information NTG0450638

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: HRK09_RS03010
• Genome accession: NZ_CP054077
• Coordinates: 594329..595432 (-)
• Length: 367 a.a.
• NCBI ID: WP_023853086.1
• Uniprot ID: A0AAI9J0F0
• Organism: Bordetella pertussis strain NZ54
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 589329..600432

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HRK09_RS02980 (HRK09_02950)	-	589367..590317 (+)	951	WP_005013747.1	IS481-like element IS481 family transposase	-
HRK09_RS02985 (HRK09_02955)	-	590311..590796 (+)	486	Protein_583	ATP-binding cassette domain-containing protein	-
HRK09_RS02990 (HRK09_02960)	phnE	590793..591683 (+)	891	WP_033446133.1	phosphonate ABC transporter, permease protein PhnE	-
HRK09_RS02995 (HRK09_02965)	phnE	591680..592501 (+)	822	WP_010931496.1	phosphonate ABC transporter, permease protein PhnE	-
HRK09_RS03005 (HRK09_02975)	-	592684..594282 (+)	1599	Protein_586	CYTH and CHAD domain-containing protein	-
HRK09_RS03010 (HRK09_02980)	pilA	594329..595432 (-)	1104	WP_023853086.1	signal recognition particle-docking protein FtsY	Machinery gene
HRK09_RS03015 (HRK09_02985)	rsmD	595508..596128 (+)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
HRK09_RS03020 (HRK09_02990)	coaD	596149..596658 (+)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
HRK09_RS03025 (HRK09_02995)	-	596713..596964 (+)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
HRK09_RS03030 (HRK09_03000)	-	597028..598161 (+)	1134	WP_010931494.1	benzoate/H(+) symporter BenE family transporter	-
HRK09_RS03035 (HRK09_03005)	-	598169..598555 (-)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 38499.02 Da
• Isoelectric Point: 6.5148

>NTDB_id=450638 HRK09_RS03010 WP_023853086.1 594329..595432(-) (pilA) [Bordetella pertussis strain NZ54]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPEPQPQQPPEPQPPVAAAPEAPRKASWLSRLKQGLSRTG
QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRA
QPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGR
ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTA
KGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1104 bp

>NTDB_id=450638 HRK09_RS03010 WP_023853086.1 594329..595432(-) (pilA) [Bordetella pertussis strain NZ54]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAGCCCGAGCCGCAGCCGCAACAACCGCCCGAGCCGCAGC
CACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGGCCTGTCGCGCACCGGC
CAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGTCGGCGCTGATCATGGC
CGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAGCGCATCGACGATCCGG
CGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTTCGACCTGGGGCGGGCC
CAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGCTGGCGCATACCTTCCA
GCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAATTGGTCGAATGGGGCA
GCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTCGGTCAATGCCGGACGT
GCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAATTGAAGAA
GATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGA
ACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAAGCTGGACGGCACCGCC
AAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATTGGATCGGCGTGGGCGA
GGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (163-365)

• SRP54-type protein, helical bundle domain (SRP54_N) (83-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.913	94.005	0.507