Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABZJ_RS14865 | Genome accession | NC_017171 |
| Coordinates | 3078260..3078640 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii MDR-ZJ06 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3073260..3083640
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABZJ_RS14835 (ABZJ_01766) | kdsB | 3074163..3074924 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ABZJ_RS14840 (ABZJ_01767) | - | 3074936..3075916 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ABZJ_RS14845 (ABZJ_01768) | - | 3075928..3076269 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABZJ_RS14850 (ABZJ_01769) | - | 3076287..3077060 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABZJ_RS14855 (ABZJ_01770) | - | 3077098..3077706 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABZJ_RS14860 (ABZJ_01771) | - | 3077716..3078270 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABZJ_RS14865 (ABZJ_01772) | xcpV | 3078260..3078640 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABZJ_RS14870 (ABZJ_01773) | xcpW | 3078640..3079341 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABZJ_RS14875 (ABZJ_01774) | gspK | 3079341..3080300 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ABZJ_RS14880 (ABZJ_01775) | - | 3080531..3081127 (+) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ABZJ_RS14885 (ABZJ_01776) | ung | 3081178..3081891 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABZJ_RS14890 (ABZJ_01777) | - | 3081888..3083012 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABZJ_RS14895 (ABZJ_01778) | tadA | 3083019..3083522 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=45059 ABZJ_RS14865 WP_000836911.1 3078260..3078640(+) (xcpV) [Acinetobacter baumannii MDR-ZJ06]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=45059 ABZJ_RS14865 WP_000836911.1 3078260..3078640(+) (xcpV) [Acinetobacter baumannii MDR-ZJ06]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |