Detailed information NTG0450534

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: HRK20_RS02990
• Genome accession: NZ_CP054065
• Coordinates: 594326..595429 (-)
• Length: 367 a.a.
• NCBI ID: WP_023853086.1
• Uniprot ID: A0AAI9J0F0
• Organism: Bordetella pertussis strain NZ66
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 589326..600429

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HRK20_RS02960 (HRK20_02935)	-	589371..590321 (+)	951	WP_005013747.1	IS481-like element IS481 family transposase	-
HRK20_RS02965 (HRK20_02940)	-	590315..590800 (+)	486	Protein_577	ATP-binding cassette domain-containing protein	-
HRK20_RS02970 (HRK20_02945)	phnE	590797..591687 (+)	891	WP_033446133.1	phosphonate ABC transporter, permease protein PhnE	-
HRK20_RS02975 (HRK20_02950)	phnE	591684..592505 (+)	822	WP_010931496.1	phosphonate ABC transporter, permease protein PhnE	-
HRK20_RS02985 (HRK20_02960)	-	592681..594279 (+)	1599	Protein_580	CYTH and CHAD domain-containing protein	-
HRK20_RS02990 (HRK20_02965)	pilA	594326..595429 (-)	1104	WP_023853086.1	signal recognition particle-docking protein FtsY	Machinery gene
HRK20_RS02995 (HRK20_02970)	rsmD	595505..596125 (+)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
HRK20_RS03000 (HRK20_02975)	coaD	596146..596655 (+)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
HRK20_RS03005 (HRK20_02980)	-	596710..596961 (+)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
HRK20_RS03010 (HRK20_02985)	-	597025..598158 (+)	1134	WP_010931494.1	benzoate/H(+) symporter BenE family transporter	-
HRK20_RS03015 (HRK20_02990)	-	598166..598552 (-)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 38499.02 Da
• Isoelectric Point: 6.5148

>NTDB_id=450534 HRK20_RS02990 WP_023853086.1 594326..595429(-) (pilA) [Bordetella pertussis strain NZ66]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPEPQPQQPPEPQPPVAAAPEAPRKASWLSRLKQGLSRTG
QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRA
QPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGR
ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTA
KGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1104 bp

>NTDB_id=450534 HRK20_RS02990 WP_023853086.1 594326..595429(-) (pilA) [Bordetella pertussis strain NZ66]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAGCCCGAGCCGCAGCCGCAACAACCGCCCGAGCCGCAGC
CACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGGCCTGTCGCGCACCGGC
CAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGTCGGCGCTGATCATGGC
CGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAGCGCATCGACGATCCGG
CGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTTCGACCTGGGGCGGGCC
CAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGCTGGCGCATACCTTCCA
GCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAATTGGTCGAATGGGGCA
GCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTCGGTCAATGCCGGACGT
GCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAATTGAAGAA
GATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGA
ACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAAGCTGGACGGCACCGCC
AAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATTGGATCGGCGTGGGCGA
GGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (163-365)

• SRP54-type protein, helical bundle domain (SRP54_N) (83-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.913	94.005	0.507