Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   I6G71_RS05145 Genome accession   NZ_CP065653
Coordinates   1016012..1018864 (+) Length   950 a.a.
NCBI ID   WP_082308615.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_914     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1011012..1023864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G71_RS05135 (I6G71_05135) znuD 1011807..1014083 (+) 2277 WP_002246147.1 TonB-dependent zinc receptor ZnuD -
  I6G71_RS05140 (I6G71_05140) - 1015060..1015857 (-) 798 WP_002226415.1 phosphatidylserine decarboxylase -
  I6G71_RS05145 (I6G71_05145) uvrA 1016012..1018864 (+) 2853 WP_082308615.1 excinuclease ABC subunit UvrA Machinery gene
  I6G71_RS05150 (I6G71_05150) yhdJ 1018867..1019724 (+) 858 WP_002246145.1 adenine-specific DNA-methyltransferase -
  I6G71_RS05155 (I6G71_05155) - 1019743..1020813 (+) 1071 WP_002246144.1 hypothetical protein -
  I6G71_RS05160 (I6G71_05160) - 1021212..1021616 (+) 405 WP_002246143.1 REP-associated tyrosine transposase -
  I6G71_RS05165 (I6G71_05165) sucD 1021788..1022678 (-) 891 WP_002221113.1 succinate--CoA ligase subunit alpha -
  I6G71_RS05170 (I6G71_05170) sucC 1022689..1023855 (-) 1167 WP_002246142.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence


Protein


Download         Length: 950 a.a.        Molecular weight: 105495.84 Da        Isoelectric Point: 6.5404

>NTDB_id=450532 I6G71_RS05145 WP_082308615.1 1016012..1018864(+) (uvrA) [Neisseria meningitidis strain FDAARGOS_914]
MCNHHPQHSHDNDTIRIRGARTHNLKNVDLDIPRHKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQMMD
KPDVDLIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLYARVGTPYCPEHNLPLSSQTVSQMVDAVLKLPEDTRVM
ILAPAVRERKGEFVDFFADLQAQGFARVRVDGEVYQLDEVPKLEKNIKHNIDVVIDRVKVKANIKQRLAESFETALRHGN
ERALAMEMDSGEEHWFSARFACPVCSYSLPELEPRLFSFNNPMGSCPTCDGLGNTNFFDSEKVVAHPELSLASGAIDGWD
KRNQFYFQMIQSLARHYGFDVQAAWETLPAKIKKVVLHGSGKEVIDFTYLSERGTTFNRSHAFEGIIPNLERRYRETDSE
TVREKLREYQNHRACPSCGGARLRKEARYVYVSGEPLHEVSAWPLTKTHQFFETLDLDGNKKQIAEKILKEITERLGFLI
NVGLDYLNLSRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKRLRDLGNSVIVVEHDEDAI
READFVVDMGPGAGEHGGNVLIADTPENVAKCENSVTGQYLSGKKSIAVPSERTPVNPGRMLVLKGARGNNLKNVTLELP
LGLITCITGVSGSGKSTLINDTLAKITARELNRAQEEPAPYDDIRGLEHLDKVINVDQSPIGRTPRSNPATYTGLFTPIR
ELFAGVPLSRERGYNVGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCEVCHGKRYNRETLEIQYKGKNISQVLDMA
VEEAREFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFADIALLL
EVIDRLKGKGNSIVIIEHNLDVIKTADWIVDLGPEGGDGGGRIIAVGTPEEVAEEKSSYTGKYLSMILKG

Nucleotide


Download         Length: 2853 bp        

>NTDB_id=450532 I6G71_RS05145 WP_082308615.1 1016012..1018864(+) (uvrA) [Neisseria meningitidis strain FDAARGOS_914]
ATGTGCAACCATCATCCCCAACATTCGCACGACAACGACACCATCCGCATACGCGGCGCGCGCACGCATAATTTGAAAAA
CGTCGATTTGGACATTCCGCGCCACAAGCTCGTAGTGGTAACAGGCTTATCGGGCAGCGGCAAATCATCGCTGGCGTTCG
ACACGCTGTATGCCGAAGGACAGCGGCGTTATGTCGAGAGCCTGTCCGCCTATGCGCGGCAGTTTTTGCAGATGATGGAC
AAACCCGATGTCGATTTGATCGAGGGTCTGTCGCCCGCGATTTCCATCGAGCAGAAATCCACCAGCCACAATCCGCGTTC
CACCGTCGGCACGGTTACGGAAATCCACGATTACCTGCGCCTTTTGTACGCACGCGTCGGCACGCCGTATTGCCCCGAAC
ACAATCTGCCGCTATCCAGCCAAACCGTATCTCAGATGGTCGATGCCGTATTAAAACTGCCGGAAGACACGCGCGTGATG
ATTCTTGCGCCGGCAGTTCGTGAGCGTAAGGGCGAGTTTGTCGACTTCTTTGCTGACTTGCAGGCGCAAGGCTTTGCCCG
TGTGCGCGTGGACGGCGAGGTCTATCAGCTTGACGAAGTGCCGAAGCTGGAAAAAAACATCAAACACAATATCGACGTGG
TCATCGACCGCGTGAAAGTGAAGGCGAACATCAAGCAGCGGCTGGCGGAAAGTTTTGAAACCGCGCTGCGCCACGGCAAC
GAGCGCGCGCTGGCGATGGAAATGGACAGCGGCGAAGAGCATTGGTTTTCCGCGCGTTTCGCCTGCCCCGTATGTTCGTA
CAGCCTGCCCGAATTGGAGCCGCGCCTCTTTTCGTTCAACAACCCGATGGGCTCCTGCCCGACTTGCGACGGCTTGGGCA
ACACCAATTTCTTCGACTCCGAAAAAGTGGTCGCGCATCCCGAATTGTCGCTGGCTTCGGGCGCGATTGACGGCTGGGAC
AAGCGCAACCAGTTCTATTTCCAAATGATTCAGTCGCTGGCGCGGCATTACGGTTTCGACGTGCAGGCTGCTTGGGAAAC
CCTACCTGCAAAAATCAAAAAAGTCGTGTTGCACGGCTCGGGCAAGGAAGTCATTGATTTCACTTACCTGTCCGAACGCG
GCACCACCTTCAACCGCAGCCACGCCTTCGAAGGCATCATCCCCAATCTCGAACGCCGCTACCGCGAAACCGACAGCGAA
ACCGTGCGCGAAAAACTGCGCGAATACCAAAACCACCGCGCCTGCCCGAGCTGCGGCGGCGCACGTTTGCGCAAAGAAGC
CCGCTACGTTTACGTCAGCGGTGAGCCGTTGCACGAAGTTTCCGCCTGGCCGCTCACCAAAACCCACCAATTCTTTGAAA
CACTGGATTTAGACGGCAACAAAAAACAAATCGCCGAAAAAATCCTCAAAGAAATCACCGAACGCCTCGGCTTCCTGATT
AACGTCGGGCTGGATTACCTGAATTTAAGCCGCTCCGCCGAAACCCTCTCCGGCGGCGAAGCCCAGCGCATCCGCCTCGC
CAGCCAAATCGGCAGCGGCCTGACCGGCGTGATGTATGTACTGGACGAACCCTCCATCGGCCTGCACCAGCGTGACAATG
ACCGCCTGCTGGCCACCCTCAAACGACTGCGCGATTTGGGCAACAGCGTGATTGTGGTCGAACACGACGAAGACGCCATC
CGCGAAGCCGATTTCGTGGTCGATATGGGCCCCGGCGCAGGCGAACACGGCGGCAACGTATTGATTGCCGACACGCCCGA
AAACGTCGCCAAATGTGAAAACTCCGTTACCGGACAATACCTCAGCGGCAAAAAATCCATTGCCGTGCCGTCTGAACGCA
CGCCCGTCAATCCCGGCCGAATGCTCGTCCTCAAAGGCGCGCGCGGCAACAACCTCAAAAACGTTACCCTCGAACTGCCG
CTCGGTTTAATTACCTGCATCACCGGCGTATCCGGCAGCGGCAAGTCCACCCTGATTAACGACACCCTCGCCAAAATCAC
CGCCCGCGAACTCAACCGCGCCCAAGAAGAACCCGCCCCATACGACGACATCCGCGGCCTCGAACACCTCGACAAAGTCA
TCAACGTCGACCAATCCCCCATCGGTCGCACCCCGCGCTCCAACCCCGCCACCTACACCGGCCTGTTCACCCCCATCCGC
GAACTCTTCGCCGGCGTACCCCTCTCGCGCGAACGCGGCTACAACGTCGGCAGATTCTCCTTCAACGTCAAAGGCGGCCG
CTGCGAAGCCTGCCAAGGCGACGGCGTGATTAAAGTCGAAATGCACTTCCTGCCCGACGTGTACGTCCCCTGCGAAGTCT
GCCACGGCAAACGCTACAACCGCGAAACCCTCGAAATCCAATACAAAGGCAAAAACATCAGTCAAGTCCTCGACATGGCC
GTCGAAGAAGCCCGCGAATTCTTCGACGCCGTCCCCACCGTATCGCGCAAACTGCAAACCTTGATGGACGTAGGCTTAGG
CTACATCCGTCTCGGCCAATCCGCCACCACCCTCTCCGGCGGCGAAGCCCAGCGCGTCAAACTCGCCTTGGAACTCTCCA
AACGCGACACCGGCAGAACGCTCTACATCCTCGACGAACCCACCACCGGCCTACACTTCGCCGACATCGCCCTGCTGCTG
GAAGTCATAGACCGTCTGAAAGGCAAAGGCAACTCGATAGTGATTATCGAGCATAATCTGGATGTGATTAAAACCGCCGA
TTGGATTGTGGACTTAGGGCCAGAAGGCGGCGACGGCGGAGGGAGGATTATTGCGGTGGGGACGCCTGAAGAAGTGGCGG
AAGAGAAAAGTAGTTATACTGGAAAGTATTTAAGTATGATTCTGAAAGGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

59.295

98.526

0.584

  uvrA Streptococcus pneumoniae TIGR4

59.295

98.526

0.584

  uvrA Streptococcus pneumoniae D39

59.295

98.526

0.584