Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HQ868_RS15890 Genome accession   NZ_CP054063
Coordinates   3225501..3226097 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain WSHvKP     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3220501..3231097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ868_RS15875 (HQ868_15875) helD 3220709..3222763 (-) 2055 WP_004179218.1 DNA helicase IV -
  HQ868_RS15880 (HQ868_15880) - 3222888..3223334 (+) 447 WP_021312905.1 YccF domain-containing protein -
  HQ868_RS15885 (HQ868_15885) yccS 3223352..3225487 (+) 2136 WP_002898422.1 YccS family putative transporter -
  HQ868_RS15890 (HQ868_15890) sxy/tfoX 3225501..3226097 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  HQ868_RS15895 (HQ868_15895) sulA 3226446..3226955 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  HQ868_RS15900 (HQ868_15900) ompA 3227308..3228372 (+) 1065 WP_064278948.1 porin OmpA -
  HQ868_RS15905 (HQ868_15905) matP 3228504..3228956 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HQ868_RS15910 (HQ868_15910) - 3229142..3230899 (+) 1758 WP_004147851.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=450523 HQ868_RS15890 WP_004179217.1 3225501..3226097(-) (sxy/tfoX) [Klebsiella pneumoniae strain WSHvKP]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=450523 HQ868_RS15890 WP_004179217.1 3225501..3226097(-) (sxy/tfoX) [Klebsiella pneumoniae strain WSHvKP]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTAGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51