Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   I6G80_RS23035 Genome accession   NZ_CP065647
Coordinates   4281637..4282353 (-) Length   238 a.a.
NCBI ID   WP_003179748.1    Uniprot ID   -
Organism   Bacillus licheniformis strain FDAARGOS_923     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4276637..4287353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G80_RS23025 (I6G80_23015) - 4279386..4280711 (-) 1326 WP_061576136.1 NTTRR-F1 domain -
  I6G80_RS23030 (I6G80_23020) - 4280838..4281530 (-) 693 WP_003179750.1 N-acetyltransferase -
  I6G80_RS23035 (I6G80_23025) treR 4281637..4282353 (-) 717 WP_003179748.1 trehalose operon repressor Regulator
  I6G80_RS23040 (I6G80_23030) treC 4282375..4284063 (-) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  I6G80_RS23045 (I6G80_23035) treP 4284137..4285549 (-) 1413 WP_003179744.1 PTS system trehalose-specific EIIBC component -
  I6G80_RS23050 (I6G80_23040) - 4285739..4287151 (-) 1413 WP_003179741.1 alanine/glycine:cation symporter family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27733.55 Da        Isoelectric Point: 5.8721

>NTDB_id=450501 I6G80_RS23035 WP_003179748.1 4281637..4282353(-) (treR) [Bacillus licheniformis strain FDAARGOS_923]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYLIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=450501 I6G80_RS23035 WP_003179748.1 4281637..4282353(-) (treR) [Bacillus licheniformis strain FDAARGOS_923]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATCTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.949

99.16

0.416