Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   I6G80_RS20670 Genome accession   NZ_CP065647
Coordinates   3819857..3821005 (-) Length   382 a.a.
NCBI ID   WP_017474218.1    Uniprot ID   -
Organism   Bacillus licheniformis strain FDAARGOS_923     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 3814857..3826005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G80_RS20650 (I6G80_20640) - 3814947..3815600 (+) 654 WP_009328821.1 lytic transglycosylase domain-containing protein -
  I6G80_RS20655 (I6G80_20645) - 3815882..3816280 (+) 399 WP_003180652.1 thiol management oxidoreductase -
  I6G80_RS20660 (I6G80_20650) spxH 3816277..3817179 (+) 903 WP_009328822.1 protease adaptor protein SpxH -
  I6G80_RS24920 - 3817591..3817758 (+) 168 WP_009328823.1 hypothetical protein -
  I6G80_RS20665 (I6G80_20655) pepF 3817815..3819644 (-) 1830 WP_282334326.1 oligoendopeptidase F Regulator
  I6G80_RS20670 (I6G80_20660) coiA 3819857..3821005 (-) 1149 WP_017474218.1 competence protein CoiA family protein Machinery gene
  I6G80_RS20675 (I6G80_20665) - 3821123..3822718 (+) 1596 WP_197942066.1 sensor histidine kinase -
  I6G80_RS20680 (I6G80_20670) - 3822741..3823457 (+) 717 WP_009328827.1 response regulator -
  I6G80_RS20685 (I6G80_20675) - 3823477..3824979 (-) 1503 WP_017474220.1 tripartite tricarboxylate transporter permease -
  I6G80_RS20690 (I6G80_20680) - 3825002..3825457 (-) 456 WP_009328829.1 tripartite tricarboxylate transporter TctB family protein -

Sequence


Protein


Download         Length: 382 a.a.        Molecular weight: 44663.06 Da        Isoelectric Point: 9.9815

>NTDB_id=450477 I6G80_RS20670 WP_017474218.1 3819857..3821005(-) (coiA) [Bacillus licheniformis strain FDAARGOS_923]
MFSAMIDQGGTICLADGYKAEDLKRLRKRHAFYCPVCRCELDLKIGSVKLPHFAHKPDAACPVPHEPESPYHLKGKRLLY
EWLGRQGLRPVLEPYLQEIRQRPDLLLEHGTRQVAVEFQCANLNAAAYRKRTEGFLRLGIEPVWILGGNRIKRLTGDLFQ
LSRFHWQFIQKSDKPPKLLFFCPEQKAFIILEHLIPFQTNKTSASLRFLPLAEASWRNVTERESRSPLQLKGWKKNILSF
RMSAVRFLSKETKQIAALFYENHQLPLPFFPSEAFLPVLSGYIFAHPVYVWQGYLFLFITKHDTFRLQSALHYMDWLIKG
KRLKLRWSGRQTAADAVGEYICFLHKKGFLVRKEEFYYSAGSFVPEPRLEALLKRDEHYFSE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=450477 I6G80_RS20670 WP_017474218.1 3819857..3821005(-) (coiA) [Bacillus licheniformis strain FDAARGOS_923]
ATGTTCAGTGCAATGATCGATCAAGGCGGGACCATCTGCCTTGCCGACGGATACAAAGCCGAAGATCTCAAGCGATTGAG
AAAAAGACATGCATTTTACTGCCCGGTGTGCCGGTGTGAACTCGACCTGAAAATCGGTTCCGTCAAGCTTCCGCATTTCG
CTCATAAGCCGGATGCAGCATGTCCGGTGCCCCATGAACCGGAGAGCCCCTATCACCTGAAAGGAAAGCGGCTGTTGTAC
GAATGGCTTGGCAGACAAGGACTCCGCCCGGTGCTTGAACCGTATTTGCAAGAGATCAGACAAAGGCCCGATTTGCTGCT
GGAACACGGAACCCGCCAGGTTGCGGTTGAATTTCAATGTGCGAATCTCAATGCCGCAGCGTATCGCAAAAGGACCGAAG
GCTTTCTCAGACTGGGAATCGAGCCCGTATGGATTCTCGGCGGAAACCGGATAAAACGCTTGACGGGGGATTTATTTCAG
CTTTCGCGGTTTCACTGGCAGTTCATTCAGAAAAGCGACAAGCCCCCAAAGCTCCTGTTTTTTTGCCCCGAACAAAAGGC
TTTCATCATCCTCGAACACCTCATTCCCTTTCAAACAAACAAAACATCCGCATCCTTGCGCTTTCTTCCTCTTGCTGAAG
CAAGCTGGCGTAATGTAACAGAACGAGAAAGCCGTTCGCCTCTCCAGCTCAAAGGCTGGAAAAAGAACATCCTCAGCTTT
CGGATGTCGGCCGTGCGTTTTTTATCAAAAGAAACGAAGCAGATTGCCGCCCTCTTTTATGAAAATCATCAGCTTCCGCT
CCCGTTTTTTCCCTCAGAAGCCTTTCTCCCGGTGCTGTCAGGCTATATTTTTGCCCACCCGGTTTATGTATGGCAAGGGT
ACCTTTTTTTATTTATAACGAAGCATGATACATTTCGCCTGCAGTCTGCGCTTCACTATATGGACTGGCTCATCAAGGGC
AAAAGGCTGAAGCTGAGATGGAGCGGGCGGCAAACGGCTGCGGATGCCGTCGGTGAATACATTTGTTTTTTGCATAAAAA
AGGATTTTTGGTGAGGAAAGAGGAATTTTATTATTCCGCGGGTTCTTTTGTTCCGGAGCCGCGGTTAGAGGCGCTGTTAA
AAAGGGATGAACATTATTTTTCCGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

42.308

95.288

0.403