Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A8O29_RS14730 Genome accession   NZ_CP054058
Coordinates   2864936..2865565 (-) Length   209 a.a.
NCBI ID   WP_125354727.1    Uniprot ID   -
Organism   Scandinavium goeteborgense strain CCUG 66741     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2859936..2870565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8O29_RS14715 (A8O29_014710) helD 2860177..2862231 (-) 2055 WP_174081350.1 DNA helicase IV -
  A8O29_RS14720 (A8O29_014715) - 2862356..2862802 (+) 447 WP_125354729.1 YccF domain-containing protein -
  A8O29_RS14725 (A8O29_014720) yccS 2862820..2864955 (+) 2136 WP_125354728.1 YccS family putative transporter -
  A8O29_RS14730 (A8O29_014725) sxy/tfoX 2864936..2865565 (-) 630 WP_125354727.1 TfoX/Sxy family DNA transformation protein Regulator
  A8O29_RS14735 (A8O29_014730) sulA 2865783..2866280 (+) 498 WP_125354726.1 SOS-induced cell division inhibitor SulA -
  A8O29_RS14740 (A8O29_014735) ompA 2866637..2867689 (+) 1053 WP_174081351.1 porin OmpA -
  A8O29_RS14745 (A8O29_014740) matP 2867750..2868205 (-) 456 WP_125355613.1 macrodomain Ter protein MatP -
  A8O29_RS14750 (A8O29_014745) - 2868390..2870147 (+) 1758 WP_125355615.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23946.62 Da        Isoelectric Point: 8.2867

>NTDB_id=450477 A8O29_RS14730 WP_125354727.1 2864936..2865565(-) (sxy/tfoX) [Scandinavium goeteborgense strain CCUG 66741]
MGKLSFKRIYQCEECLSSLGKIHHRALFGGYSLSVDDTVFAMVAHGELYLRVCEQSATYNASTPPRLLTLVKRGRPIALN
YYWVDENLWQDHSLLLNMSAMSLRGAQNEKQRQRDPQRMRNVPNISFQLELLLTEAGIHDLETLQKLGAAAAWYRLRAMR
KDLSVNVLFALEGAITGMHAAIIPLHRRQHLLEWAETLTERKNAMPEEE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=450477 A8O29_RS14730 WP_125354727.1 2864936..2865565(-) (sxy/tfoX) [Scandinavium goeteborgense strain CCUG 66741]
ATGGGAAAATTATCATTTAAACGGATATATCAGTGTGAAGAATGTTTATCTTCTTTGGGGAAAATTCATCACCGTGCATT
GTTTGGGGGATATAGCCTTTCCGTCGATGACACCGTCTTCGCCATGGTGGCTCATGGAGAGCTTTATCTGCGGGTATGTG
AACAAAGTGCGACCTATAACGCGTCAACGCCACCGCGGTTGTTAACGCTGGTTAAACGGGGTCGCCCGATCGCACTGAAT
TACTATTGGGTCGACGAAAACCTTTGGCAGGATCACTCTCTGCTATTGAACATGTCAGCGATGTCACTCCGTGGCGCGCA
AAACGAGAAGCAGCGTCAACGCGATCCTCAGCGGATGCGCAATGTACCCAATATCAGTTTTCAACTGGAGCTATTGCTGA
CGGAGGCAGGCATTCACGATCTGGAGACATTACAAAAGTTGGGGGCAGCGGCGGCCTGGTATCGACTGCGTGCTATGCGT
AAGGATTTAAGTGTCAATGTGCTGTTTGCACTGGAAGGCGCAATAACAGGAATGCATGCGGCCATCATTCCCTTGCACCG
CCGTCAGCATCTCCTTGAGTGGGCAGAGACGCTGACGGAGAGAAAGAACGCTATGCCCGAAGAGGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.962

99.522

0.507