Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   I6G80_RS10720 Genome accession   NZ_CP065647
Coordinates   2020366..2021115 (+) Length   249 a.a.
NCBI ID   WP_011198164.1    Uniprot ID   Q8VQ80
Organism   Bacillus licheniformis strain FDAARGOS_923     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2015366..2026115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G80_RS10705 (I6G80_10705) - 2015554..2015745 (-) 192 WP_003184058.1 hypothetical protein -
  I6G80_RS10710 (I6G80_10710) - 2016201..2018843 (+) 2643 WP_003184055.1 valine--tRNA ligase -
  I6G80_RS10715 (I6G80_10715) - 2018925..2020223 (+) 1299 WP_026080808.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  I6G80_RS10720 (I6G80_10720) comC 2020366..2021115 (+) 750 WP_011198164.1 prepilin peptidase Machinery gene
  I6G80_RS10725 (I6G80_10725) - 2021319..2022350 (+) 1032 WP_003184050.1 SPOR domain-containing protein -
  I6G80_RS10730 (I6G80_10730) - 2022504..2023076 (+) 573 WP_003184048.1 Maf family protein -
  I6G80_RS10735 (I6G80_10735) - 2023131..2023514 (+) 384 Protein_1995 UPF0758 domain-containing protein -
  I6G80_RS10740 (I6G80_10740) - 2023530..2024918 (-) 1389 WP_145655385.1 recombinase family protein -
  I6G80_RS10745 (I6G80_10745) - 2024958..2025437 (-) 480 WP_009329279.1 ImmA/IrrE family metallo-endopeptidase -
  I6G80_RS10750 (I6G80_10750) - 2025470..2025913 (-) 444 WP_009329277.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26954.53 Da        Isoelectric Point: 8.7373

>NTDB_id=450412 I6G80_RS10720 WP_011198164.1 2020366..2021115(+) (comC) [Bacillus licheniformis strain FDAARGOS_923]
MFIFYLFTAGLVLGSFFNSAGRRIPEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLSIVYPAVELSA
AILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGGMLPLL
TLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKKNEPMPFAPAILAGTLTSCFYGEPMI
EWYLQTAWW

Nucleotide


Download         Length: 750 bp        

>NTDB_id=450412 I6G80_RS10720 WP_011198164.1 2020366..2021115(+) (comC) [Bacillus licheniformis strain FDAARGOS_923]
ATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTTTAATTCGGCCGGGCGCCGCATTCCTGAAAA
GATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGCTGGGCTTCTCGGAGCTGATACCGGTTTTGT
CCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCGATCGTGTATCCGGCAGTTGAGCTCTCCGCC
GCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCTGGTGATTGTGCTTGCTCTTATATCTCTGCT
TTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTGTTCTTTGTTTTTTCCTGCCTGTCTTTGCCG
TCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGTGCGATGGCCGGCGGTATGCTGCCCCTCTTG
ACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTTTGCGGTAATCGGCATGGCGCTCGGCAGCCG
CCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCCGCAGGAACGGTGCTTGGTCTTATTGCACTCCTGGCAGGCAAACTGA
AGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTGACGAGCTGCTTCTATGGCGAACCAATGATC
GAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)

Type IV leader peptidase family (Peptidase_A24)

(102-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

48.347

97.189

0.47