Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ALEK_RS15645 Genome accession   NZ_CP054052
Coordinates   3225355..3225735 (+) Length   126 a.a.
NCBI ID   WP_071627489.1    Uniprot ID   -
Organism   Poseidonibacter lekithochrous strain DSM 100870     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3220355..3230735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALEK_RS15615 (ALEK_3124) - 3220430..3221212 (-) 783 WP_087148733.1 MBL fold metallo-hydrolase -
  ALEK_RS15620 (ALEK_3125) gatC 3221373..3221663 (+) 291 WP_071627493.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  ALEK_RS15625 - 3221717..3222016 (+) 300 Protein_3036 arsenate reductase family protein -
  ALEK_RS15630 (ALEK_3126) - 3222068..3223432 (-) 1365 WP_071627492.1 class II 3-deoxy-7-phosphoheptulonate synthase -
  ALEK_RS15635 (ALEK_3127) - 3223588..3224580 (-) 993 WP_071627491.1 transaldolase -
  ALEK_RS15640 (ALEK_3128) serB 3224663..3225283 (-) 621 WP_071627490.1 phosphoserine phosphatase SerB -
  ALEK_RS15645 (ALEK_3129) dprB 3225355..3225735 (+) 381 WP_071627489.1 Holliday junction resolvase RuvX Machinery gene
  ALEK_RS15650 (ALEK_3130) nrtS 3225790..3226179 (+) 390 WP_071627488.1 nitrate/nitrite transporter NrtS -
  ALEK_RS15655 (ALEK_3131) - 3226181..3227296 (-) 1116 WP_071627487.1 HD-GYP domain-containing protein -
  ALEK_RS15660 (ALEK_3132) acpS 3227311..3227661 (-) 351 WP_071627486.1 holo-ACP synthase -
  ALEK_RS15665 (ALEK_3133) - 3227691..3228650 (+) 960 WP_071627485.1 ABC transporter permease -
  ALEK_RS15670 (ALEK_3134) panC 3228672..3229490 (+) 819 WP_071627484.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14378.74 Da        Isoelectric Point: 5.9393

>NTDB_id=450344 ALEK_RS15645 WP_071627489.1 3225355..3225735(+) (dprB) [Poseidonibacter lekithochrous strain DSM 100870]
MKLACIDIGLKRIGVAICLSSDIVTPQSAILRKNRNQAANDVNAFLKEWEIEKLIVGLPSASEDMQKRINHFVKLLELDI
PFEFQEENMSSIEAEDLIKGEIKYKRDGRVDSIAAKIILERYLFRS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=450344 ALEK_RS15645 WP_071627489.1 3225355..3225735(+) (dprB) [Poseidonibacter lekithochrous strain DSM 100870]
ATGAAACTAGCATGCATTGATATTGGATTAAAAAGAATAGGAGTTGCTATCTGTCTAAGTAGTGATATTGTTACTCCACA
AAGCGCAATTTTGAGAAAAAATAGGAACCAAGCAGCAAATGATGTTAATGCTTTTTTAAAAGAATGGGAAATAGAAAAAC
TAATAGTTGGACTTCCAAGTGCAAGTGAAGATATGCAAAAAAGAATCAATCATTTTGTTAAATTATTAGAATTAGATATT
CCTTTTGAATTCCAAGAAGAAAATATGAGTTCAATTGAAGCAGAAGATTTAATCAAAGGCGAAATCAAATATAAAAGAGA
TGGAAGAGTTGATTCAATTGCAGCAAAAATTATCTTAGAGCGATACCTATTTCGAAGCTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

48.438

100

0.492