Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ALEK_RS12200 Genome accession   NZ_CP054052
Coordinates   2578043..2579392 (+) Length   449 a.a.
NCBI ID   WP_071627760.1    Uniprot ID   -
Organism   Poseidonibacter lekithochrous strain DSM 100870     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2573043..2584392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALEK_RS12175 (ALEK_2436) - 2573492..2574157 (+) 666 WP_071627756.1 response regulator transcription factor -
  ALEK_RS12180 (ALEK_2437) - 2574141..2575265 (+) 1125 WP_071627828.1 sensor histidine kinase -
  ALEK_RS12185 (ALEK_2438) - 2575347..2576234 (+) 888 WP_071627757.1 c-type cytochrome -
  ALEK_RS12190 (ALEK_2439) - 2576299..2576850 (-) 552 WP_071627758.1 YqiA/YcfP family alpha/beta fold hydrolase -
  ALEK_RS12195 (ALEK_2440) - 2576968..2577951 (+) 984 WP_071627759.1 lipid A deacylase LpxR family protein -
  ALEK_RS12200 (ALEK_2441) radA 2578043..2579392 (+) 1350 WP_071627760.1 DNA repair protein RadA Machinery gene
  ALEK_RS12205 (ALEK_2442) - 2579389..2579958 (-) 570 WP_071627761.1 transglutaminase-like domain-containing protein -
  ALEK_RS12210 (ALEK_2443) ybeY 2580047..2580466 (+) 420 WP_071627762.1 rRNA maturation RNase YbeY -
  ALEK_RS12215 (ALEK_2444) - 2580468..2581388 (+) 921 WP_071627763.1 calcium/sodium antiporter -
  ALEK_RS12220 (ALEK_2445) - 2581397..2581801 (-) 405 WP_071627764.1 Fur family transcriptional regulator -
  ALEK_RS12225 (ALEK_2446) - 2582022..2582684 (+) 663 WP_071627765.1 ferritin family protein -
  ALEK_RS12230 (ALEK_2447) - 2582742..2583392 (+) 651 WP_071627766.1 ferritin family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49111.49 Da        Isoelectric Point: 6.2742

>NTDB_id=450340 ALEK_RS12200 WP_071627760.1 2578043..2579392(+) (radA) [Poseidonibacter lekithochrous strain DSM 100870]
MAKKKTSLFECQHCGEQSTKWLGKCPNCGGWDSFIELNQEQQEVLKKVSKVSSSTSKATPITQIVQDDVTRFSSFNEEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSMANSGKKVLYVSGEESAGQIKLRANRLDANHDGLFLLSEIKLEEIQD
ELLRQDYQVVIIDSIQTIYSSNLTSAPGSVSQVREITFELMRKAKESDIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GESSKELRMLRGFKNRFGSTSEIGIFEMTQEGLVSAKDITSKFFDKSKAQSGSALTVAMEGSRALILEVQALVTESTHPN
PKRSATGFDGNRLNMLLALLEKKIDLPLNHYDVFVNISGGIKIKESSADLAVVAAIISSFRDRPISKESVFIGEVSLTGE
IKDVYSIDMRLKEAQAQGIQKAVIALKPNLKLDIKCFAVDEVPKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=450340 ALEK_RS12200 WP_071627760.1 2578043..2579392(+) (radA) [Poseidonibacter lekithochrous strain DSM 100870]
ATGGCAAAGAAAAAAACATCATTATTTGAGTGTCAACACTGTGGAGAACAATCTACAAAATGGCTAGGTAAGTGTCCAAA
TTGTGGAGGATGGGATAGTTTTATTGAACTAAACCAAGAACAACAAGAAGTTCTTAAAAAAGTCTCAAAAGTTTCATCAA
GTACTTCAAAAGCAACACCAATTACGCAAATTGTGCAAGATGATGTAACAAGATTTTCATCTTTTAATGAAGAGTTTGAC
CTAGTATTAGGTGGAGGAATTGTTCCTGGAAGTTTAACACTAATTGGTGGAAGCCCAGGAGTTGGAAAGTCAACACTACT
ATTAAAAGTAGCAGGAAGCATGGCAAACAGTGGTAAAAAAGTTTTATATGTATCAGGGGAAGAAAGTGCTGGACAGATTA
AACTGAGAGCAAATAGATTAGATGCTAACCATGATGGACTTTTTTTATTAAGTGAAATTAAACTAGAAGAGATTCAAGAT
GAACTTCTAAGACAAGATTATCAAGTAGTAATTATTGATTCTATTCAAACAATTTATTCTTCAAACCTAACATCAGCTCC
CGGTTCTGTATCACAAGTAAGAGAGATTACTTTTGAGCTTATGAGAAAAGCAAAAGAGTCTGATATTGCTATGTTTATTA
TTGGACATATTACAAAAGATGGAAGTATTGCAGGTCCTAGAGTTTTAGAGCATATGGTTGATACAGTTTTATATTTTGAG
GGAGAGTCTTCAAAAGAGTTAAGAATGCTAAGAGGTTTCAAAAATAGATTTGGTTCAACATCAGAGATTGGTATTTTTGA
AATGACACAAGAAGGATTAGTAAGTGCAAAGGATATTACATCAAAATTCTTTGATAAATCAAAAGCACAAAGTGGTTCAG
CTCTTACAGTTGCAATGGAAGGAAGCCGTGCTTTAATCTTAGAAGTACAAGCTTTAGTGACAGAGAGTACTCATCCAAAT
CCTAAAAGATCAGCTACTGGGTTTGATGGAAATAGATTAAATATGCTTTTAGCTTTACTTGAGAAAAAAATAGACTTACC
GCTTAATCACTATGATGTATTTGTAAATATTTCAGGTGGAATAAAAATCAAAGAAAGTTCAGCAGATTTAGCAGTAGTTG
CCGCAATTATTTCTTCTTTTAGAGATAGACCTATTTCTAAAGAGTCTGTATTTATTGGAGAAGTTTCATTAACTGGTGAG
ATTAAAGATGTTTATTCAATTGATATGAGATTAAAAGAAGCTCAAGCTCAAGGGATTCAAAAAGCTGTAATCGCTTTAAA
ACCTAACCTTAAACTTGATATTAAATGTTTTGCCGTTGATGAAGTACCAAAAATGATAGAACTTTTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(67-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.095

98.441

0.483
  radA Streptococcus mitis NCTC 12261

48.946

95.1

0.465
  radA Streptococcus mitis SK321

48.946

95.1

0.465
  radA Streptococcus pneumoniae Rx1

48.946

95.1

0.465
  radA Streptococcus pneumoniae D39

48.946

95.1

0.465
  radA Streptococcus pneumoniae R6

48.946

95.1

0.465
  radA Streptococcus pneumoniae TIGR4

48.946

95.1

0.465