Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I6H00_RS20820 Genome accession   NZ_CP065615
Coordinates   4160734..4161201 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_943     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4155734..4166201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H00_RS20795 (I6H00_20795) rpsG 4155875..4156345 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  I6H00_RS20800 (I6H00_20800) fusA 4156442..4158556 (+) 2115 WP_000124700.1 elongation factor G -
  I6H00_RS20805 (I6H00_20805) tuf 4158627..4159811 (+) 1185 WP_000031783.1 elongation factor Tu -
  I6H00_RS20810 (I6H00_20810) bfd 4159994..4160188 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  I6H00_RS20815 (I6H00_20815) bfr 4160261..4160737 (+) 477 WP_000675515.1 bacterioferritin -
  I6H00_RS20820 (I6H00_20820) pilD 4160734..4161201 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  I6H00_RS20825 (I6H00_20825) rpsJ 4161580..4161891 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  I6H00_RS20830 (I6H00_20830) rplC 4161924..4162553 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  I6H00_RS20835 (I6H00_20835) rplD 4162564..4163169 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  I6H00_RS20840 (I6H00_20840) rplW 4163166..4163468 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  I6H00_RS20845 (I6H00_20845) rplB 4163486..4164307 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  I6H00_RS20850 (I6H00_20850) rpsS 4164324..4164602 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  I6H00_RS20855 (I6H00_20855) rplV 4164617..4164949 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  I6H00_RS20860 (I6H00_20860) rpsC 4164967..4165668 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  I6H00_RS20865 (I6H00_20865) rplP 4165681..4166091 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=450340 I6H00_RS20820 WP_000340171.1 4160734..4161201(-) (pilD) [Escherichia coli strain FDAARGOS_943]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=450340 I6H00_RS20820 WP_000340171.1 4160734..4161201(-) (pilD) [Escherichia coli strain FDAARGOS_943]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361