Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ACBT_RS10150 Genome accession   NZ_CP054051
Coordinates   2013154..2013534 (+) Length   126 a.a.
NCBI ID   WP_024774537.1    Uniprot ID   -
Organism   Aliarcobacter cibarius strain LMG 21996     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2008154..2018534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBT_RS10125 (ACBT_2012) - 2008223..2009074 (-) 852 WP_024774542.1 outer membrane protein OmpK -
  ACBT_RS10130 (ACBT_2013) - 2009105..2010457 (-) 1353 WP_024774541.1 class II 3-deoxy-7-phosphoheptulonate synthase -
  ACBT_RS10135 (ACBT_2014) - 2010519..2011511 (-) 993 WP_024774540.1 transaldolase -
  ACBT_RS10140 (ACBT_2015) serB 2011538..2012161 (-) 624 WP_024774539.1 phosphoserine phosphatase SerB -
  ACBT_RS10145 (ACBT_2016) - 2012243..2013157 (+) 915 WP_024774538.1 methylenetetrahydrofolate reductase -
  ACBT_RS10150 (ACBT_2017) dprB 2013154..2013534 (+) 381 WP_024774537.1 Holliday junction resolvase RuvX Machinery gene
  ACBT_RS10155 (ACBT_2018) - 2013592..2014182 (-) 591 WP_024774536.1 FmdE family protein -
  ACBT_RS10160 (ACBT_2019) acpS 2014334..2014687 (-) 354 WP_024774535.1 holo-ACP synthase -
  ACBT_RS10165 - 2014717..2015058 (+) 342 WP_034218458.1 peptide ABC transporter permease -
  ACBT_RS10170 (ACBT_2021) - 2015252..2016616 (+) 1365 WP_024774758.1 transposase -
  ACBT_RS10175 (ACBT_2020) - 2016618..2017247 (+) 630 Protein_1975 ABC transporter permease -
  ACBT_RS10180 (ACBT_2022) panC 2017275..2018093 (+) 819 WP_024776264.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14376.75 Da        Isoelectric Point: 7.9961

>NTDB_id=450335 ACBT_RS10150 WP_024774537.1 2013154..2013534(+) (dprB) [Aliarcobacter cibarius strain LMG 21996]
MKLAAIDIGLKRIGVAICLTSDIVTPQMAIIRKNRNQAAADVNTFLKEWEIDKLIVGFPSSSEDSQNRIKHFVNLLELKI
PFEFQEENMSSIEAEDLIKGEIKYKRDGRVDSLAAKIILERYLQKK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=450335 ACBT_RS10150 WP_024774537.1 2013154..2013534(+) (dprB) [Aliarcobacter cibarius strain LMG 21996]
TTGAAATTAGCTGCTATTGATATAGGACTTAAAAGAATTGGAGTTGCTATTTGCTTAACAAGTGATATCGTAACTCCTCA
AATGGCAATAATCAGAAAAAATAGAAACCAAGCTGCCGCAGATGTAAATACTTTTTTAAAAGAGTGGGAAATTGACAAAC
TAATTGTTGGATTTCCTAGTTCTAGTGAAGATTCTCAAAATAGAATAAAACATTTTGTAAATTTATTAGAACTTAAAATT
CCTTTTGAATTTCAAGAAGAAAACATGAGTTCAATTGAAGCTGAAGATTTAATCAAAGGTGAAATCAAATACAAAAGAGA
TGGTAGAGTTGATTCTTTAGCTGCAAAAATAATTTTGGAAAGATATCTACAAAAAAAATAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

48.031

100

0.484