Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACBT_RS07855 Genome accession   NZ_CP054051
Coordinates   1574835..1576184 (+) Length   449 a.a.
NCBI ID   WP_024776131.1    Uniprot ID   A0A7L5JQI7
Organism   Aliarcobacter cibarius strain LMG 21996     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1569835..1581184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBT_RS07850 (ACBT_1554) - 1574180..1574740 (-) 561 WP_024776132.1 YqiA/YcfP family alpha/beta fold hydrolase -
  ACBT_RS07855 (ACBT_1555) radA 1574835..1576184 (+) 1350 WP_024776131.1 DNA repair protein RadA Machinery gene
  ACBT_RS07860 (ACBT_1556) - 1576195..1576611 (-) 417 WP_024776130.1 thioesterase family protein -
  ACBT_RS07865 (ACBT_1557) ybeY 1576676..1577095 (+) 420 WP_024776129.1 rRNA maturation RNase YbeY -
  ACBT_RS07870 (ACBT_1558) - 1577116..1577520 (-) 405 WP_024776128.1 Fur family transcriptional regulator -
  ACBT_RS07875 (ACBT_1559) - 1577689..1579266 (+) 1578 WP_024776127.1 endonuclease/exonuclease/phosphatase family protein -
  ACBT_RS07880 (ACBT_1560) murJ 1579263..1580570 (+) 1308 WP_024776126.1 murein biosynthesis integral membrane protein MurJ -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49435.77 Da        Isoelectric Point: 6.5103

>NTDB_id=450332 ACBT_RS07855 WP_024776131.1 1574835..1576184(+) (radA) [Aliarcobacter cibarius strain LMG 21996]
MAKKKNTLFECQHCGEQSSKWLGKCPNCDSWDSFLELSTEQQEVLKQTITASNSSSKARPITEILQDDVTRFSSFNYEFD
LVLGGGVVPGSLTLIGGSPGVGKSTLLLKVAGSIAKSEKKVLYVSGEESAGQIKLRANRLDANHNSLYLLSEIKLEEIMD
ELLRENYEVCVIDSIQTIYSSHLNSAPGSVSQVREITFELMRKAKESNIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GESSKELRMLRGFKNRFGSTSEIGIFEMTSEGLVSAKDIASKFFDKNKAQSGSSLTVSMEGSRAIILEVQALVCETTFPN
PKRSATGFDTNRLTMLLALLEKKLDLPFNHYDVFVNISGGIKIKESSADLAVIAAIISSFRNRPISKESVFIGEVSLTGE
IKDVYSIDLRLKEAQAQGIKKAIIAQKPNLKLDIKTFAVDEVSKVIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=450332 ACBT_RS07855 WP_024776131.1 1574835..1576184(+) (radA) [Aliarcobacter cibarius strain LMG 21996]
ATGGCAAAAAAGAAAAACACTCTTTTTGAGTGCCAACATTGTGGAGAACAATCATCAAAATGGTTAGGAAAATGTCCAAA
TTGTGACTCTTGGGATAGTTTTTTAGAGCTAAGTACAGAGCAACAAGAAGTTTTAAAACAGACTATTACAGCTTCAAACT
CATCATCAAAAGCAAGACCTATTACAGAAATTTTGCAAGATGATGTTACAAGATTTTCATCTTTTAACTATGAATTTGAT
TTAGTTTTAGGTGGAGGCGTGGTACCTGGAAGTTTAACTCTTATTGGGGGAAGTCCTGGTGTTGGTAAATCTACACTATT
GCTAAAAGTTGCTGGTAGTATTGCAAAATCAGAGAAGAAAGTGCTTTATGTATCAGGAGAAGAGAGTGCCGGTCAAATAA
AATTAAGAGCAAATAGATTAGACGCAAACCATAATAGTTTATATTTACTAAGTGAAATTAAACTTGAAGAGATTATGGAT
GAACTTCTGAGAGAAAATTATGAAGTTTGTGTTATTGATTCAATTCAAACGATTTATTCAAGCCACTTAAATTCAGCGCC
AGGAAGTGTATCTCAGGTTCGTGAAATTACTTTTGAACTTATGCGTAAAGCAAAAGAATCAAATATTGCTATGTTTATTA
TTGGTCACATTACAAAAGATGGAAGCATCGCAGGACCTAGAGTTTTAGAACATATGGTTGATACGGTTTTATATTTTGAG
GGAGAGTCAAGTAAAGAACTAAGAATGCTTAGAGGTTTTAAAAATAGATTTGGAAGTACAAGTGAAATTGGAATTTTTGA
GATGACTAGTGAAGGGCTTGTTAGCGCAAAAGATATTGCATCAAAGTTTTTTGATAAAAATAAAGCTCAAAGTGGTTCTA
GTCTAACAGTTTCTATGGAAGGAAGCAGAGCAATAATTCTAGAAGTTCAAGCTTTGGTTTGTGAAACAACTTTTCCAAAT
CCTAAAAGAAGTGCAACAGGTTTTGATACAAATAGACTTACAATGCTTTTAGCTCTTTTAGAAAAAAAATTAGATTTACC
TTTTAACCACTATGATGTTTTTGTAAATATAAGTGGTGGAATAAAAATAAAAGAAAGTAGTGCAGATTTGGCAGTAATTG
CAGCAATTATTAGCTCATTTAGAAATCGTCCAATATCAAAAGAGTCTGTTTTTATAGGTGAAGTTAGCTTAACAGGTGAA
ATAAAAGATGTTTATTCAATTGATTTAAGATTAAAAGAGGCTCAAGCACAAGGTATTAAAAAAGCAATTATTGCACAAAA
ACCAAATTTAAAACTAGATATAAAAACTTTTGCAGTAGATGAAGTATCAAAAGTAATAGAGCTTTTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-34)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

AAA domain (AAA_25)

(83-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L5JQI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

97.105

0.486
  radA Streptococcus pneumoniae Rx1

47.788

100

0.481
  radA Streptococcus pneumoniae D39

47.788

100

0.481
  radA Streptococcus pneumoniae R6

47.788

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.788

100

0.481
  radA Streptococcus mitis SK321

47.566

100

0.479
  radA Streptococcus mitis NCTC 12261

49.649

95.1

0.472