Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACBT_RS05900 Genome accession   NZ_CP054051
Coordinates   1196576..1198405 (-) Length   609 a.a.
NCBI ID   WP_024776011.1    Uniprot ID   A0A7L5JPF2
Organism   Aliarcobacter cibarius strain LMG 21996     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1191576..1203405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBT_RS05885 (ACBT_1164) - 1191613..1193982 (-) 2370 WP_138108841.1 hypothetical protein -
  ACBT_RS05890 (ACBT_1165) - 1193988..1195499 (-) 1512 WP_024776013.1 PAS domain S-box protein -
  ACBT_RS05895 (ACBT_1166) - 1195537..1196562 (-) 1026 WP_024776012.1 alanine racemase -
  ACBT_RS05900 (ACBT_1167) uvrC 1196576..1198405 (-) 1830 WP_024776011.1 excinuclease ABC subunit UvrC Machinery gene
  ACBT_RS05905 (ACBT_1168) pnuC 1198478..1199044 (-) 567 WP_228130323.1 nicotinamide riboside transporter PnuC -
  ACBT_RS05910 (ACBT_1169) - 1199091..1200011 (-) 921 WP_024776010.1 diguanylate cyclase -
  ACBT_RS05915 (ACBT_1170) - 1200097..1203234 (-) 3138 WP_024776009.1 efflux RND transporter permease subunit -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70883.94 Da        Isoelectric Point: 9.1169

>NTDB_id=450331 ACBT_RS05900 WP_024776011.1 1196576..1198405(-) (uvrC) [Aliarcobacter cibarius strain LMG 21996]
MNLEEKLKLLPSEAGVYQYFDNQGHLLYIGKAKSLKNRVKSYFKFSPTLQASNDLSPRIYKMISETVFLEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIFVDLNEDFPRLEITRKIEKGKNIKYFGPYSSGARDMLDSIYEIIPLVQKKSC
VKSKKACLFFQIGKCLAPCENKVNKDEYKKILDEALGYIYNKSKLLNKLKEKMQFYSENFRFEEALVLRDRAKTIEKSEI
KTGIDLTTNEDLDIFAIKSSNKKAVLVRMFIRDGKLASSNYDFMKTNDDVEFDIQEAYKRAIINYYSNELPIIPKEIIVA
DEIEDIITIEEFLYKKFNKKIKIVNPKIDKKASIVKIALNNCDELLRLENIKDENSIYNELKELFSLNCVPNIIETFDNS
HLMGQATVGGMVVWNKGKENFDKKSYRHYNLESLDEYSQMKEMLYRRVESFDKNNPPDLWVIDGGTTLLNLAFDIVDSIG
VNLDIIAISKQKVDAKAYRAKGNAKDIVHFKQNGEIKSLNLLPSDKRLQFIQRLRDEAHRFAISFHKKQKRKEDKEISLL
QIKGIGEAKIKKLLLYFGEFEKIRNASFEELKSVLNEADAHNIINYFNN

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=450331 ACBT_RS05900 WP_024776011.1 1196576..1198405(-) (uvrC) [Aliarcobacter cibarius strain LMG 21996]
ATGAATTTAGAAGAAAAATTAAAACTGCTTCCATCAGAAGCCGGAGTCTATCAGTACTTTGACAATCAAGGACATCTTTT
ATACATTGGAAAGGCTAAAAGCTTAAAAAATAGAGTAAAAAGTTACTTTAAATTCAGTCCTACTTTACAAGCTTCAAACG
ATTTAAGTCCACGAATTTATAAAATGATTAGCGAAACTGTTTTTTTAGAATGGATTGTTGTTCCAAATGAACATGATGCC
TTAATTCTTGAAAACTCACTAATTAAACAGCTAAAACCAAAATATAATGTACTTTTACGAGATGATAAAACATACCCTTA
TATTTTCGTAGATTTAAATGAAGATTTTCCAAGATTAGAAATCACAAGAAAAATAGAAAAAGGAAAAAATATAAAATATT
TTGGTCCATATTCAAGTGGTGCTAGAGATATGCTTGATAGCATTTATGAGATAATTCCCCTAGTTCAAAAAAAATCTTGT
GTGAAAAGTAAAAAAGCTTGCTTATTTTTTCAAATAGGAAAATGTCTAGCTCCATGTGAAAATAAAGTGAATAAAGATGA
GTATAAAAAGATTTTAGATGAAGCTTTAGGATACATCTATAATAAATCAAAACTATTAAATAAACTAAAAGAAAAAATGC
AATTTTATTCTGAAAATTTTAGATTTGAAGAGGCTTTAGTTTTACGAGATAGAGCGAAAACTATTGAAAAATCAGAAATT
AAAACTGGAATTGATTTAACAACAAATGAAGATTTAGATATTTTTGCCATAAAATCTAGTAATAAAAAAGCTGTACTTGT
AAGAATGTTTATAAGAGATGGAAAACTAGCTTCTTCAAACTATGATTTCATGAAAACAAATGACGATGTTGAATTTGATA
TACAAGAAGCCTATAAAAGAGCAATAATAAATTACTATTCAAATGAATTACCAATTATTCCAAAAGAGATAATTGTGGCC
GATGAGATTGAAGATATTATCACGATTGAAGAATTTTTATATAAGAAATTCAATAAAAAAATAAAAATAGTAAACCCAAA
AATAGATAAAAAAGCTTCTATTGTAAAAATTGCTTTAAATAATTGTGATGAACTTTTAAGATTAGAGAATATTAAAGATG
AGAATTCTATATACAATGAATTAAAAGAACTGTTTTCCTTAAACTGTGTTCCAAATATAATAGAAACTTTTGACAATTCA
CATCTTATGGGACAGGCAACAGTTGGTGGAATGGTTGTATGGAATAAAGGAAAAGAGAATTTTGATAAAAAATCTTATAG
ACACTATAATCTTGAGAGCTTAGATGAATACTCTCAAATGAAAGAGATGCTATATAGAAGGGTTGAGAGTTTTGATAAAA
ATAATCCGCCAGATTTATGGGTAATTGATGGAGGGACGACTTTACTAAATTTAGCTTTTGATATAGTTGACTCAATTGGG
GTAAATTTAGATATTATTGCTATTTCAAAACAAAAAGTTGATGCAAAAGCTTATAGAGCAAAAGGAAATGCAAAAGATAT
AGTGCATTTTAAACAAAATGGTGAGATTAAAAGTCTAAATTTGCTTCCTAGCGATAAAAGACTACAATTTATTCAAAGAT
TAAGAGATGAAGCTCATCGTTTTGCAATTAGTTTTCATAAAAAGCAAAAAAGAAAAGAGGATAAAGAGATTTCGCTTCTA
CAAATTAAAGGTATTGGTGAAGCAAAAATAAAAAAATTACTCTTATATTTTGGAGAGTTTGAAAAAATCAGAAATGCTTC
TTTTGAAGAGTTAAAATCTGTCTTAAATGAAGCAGATGCACACAATATTATAAACTATTTTAATAATTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(14-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(382-543)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L5JPF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.414

98.686

0.507