Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6H00_RS02605 Genome accession   NZ_CP065615
Coordinates   495886..497313 (-) Length   475 a.a.
NCBI ID   WP_000980613.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_943     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 490886..502313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H00_RS02575 (I6H00_02575) yeeZ 490941..491765 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  I6H00_RS02580 (I6H00_02580) yeeY 491811..492740 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  I6H00_RS02585 (I6H00_02585) yoeI 492955..493017 (+) 63 WP_010723108.1 membrane protein YoeI -
  I6H00_RS02590 (I6H00_02590) plaP 493007..494365 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6H00_RS02595 (I6H00_02595) tsuA 494544..495602 (+) 1059 Protein_513 thiosulfate utilization transporter TsuA/YeeE -
  I6H00_RS02600 (I6H00_02600) tsuB 495616..495843 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I6H00_RS02605 (I6H00_02605) sbcB 495886..497313 (-) 1428 WP_000980613.1 exodeoxyribonuclease I Machinery gene
  I6H00_RS02610 (I6H00_02610) dacD 497519..498685 (+) 1167 WP_004979472.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6H00_RS02615 (I6H00_02615) sbmC 498804..499277 (+) 474 WP_197939877.1 DNA gyrase inhibitor SbmC -
  I6H00_RS02620 (I6H00_02620) yeeA 499475..500533 (+) 1059 WP_001200891.1 FUSC family protein -
  I6H00_RS02625 (I6H00_02625) tmaR 500705..501034 (+) 330 WP_000450409.1 DUF496 family protein -
  I6H00_RS02630 (I6H00_02630) - 501135..501317 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  I6H00_RS02635 (I6H00_02635) - 501389..501517 (+) 129 Protein_521 transposase domain-containing protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54471.73 Da        Isoelectric Point: 5.2425

>NTDB_id=450285 I6H00_RS02605 WP_000980613.1 495886..497313(-) (sbcB) [Escherichia coli strain FDAARGOS_943]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
ERLGIDRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEYRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=450285 I6H00_RS02605 WP_000980613.1 495886..497313(-) (sbcB) [Escherichia coli strain FDAARGOS_943]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACTCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGGATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGACGCT
GAGCGTTTAGGGATTGATCGTCAACACTGCCTGGATAACCTGAAAGTGTTGCGCGAAAACCCGCAAGTACGCGACAAAGT
TGTGGCAATTTTTGCAGAAGCTGAACCGTTTACACCATCAGATAATGTAGATGCACAGCTTTATAATGGCTTTTTTAGCG
ACGCCGATCGTGCAGCAATGAAAATCGTGCTGGAGACTGAACCGCGTAATTTACCGGCTCTGGATATCACCTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGTACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583