Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6H01_RS03770 Genome accession   NZ_CP065613
Coordinates   728214..729641 (+) Length   475 a.a.
NCBI ID   WP_001471732.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_944     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 723214..734641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H01_RS03740 (I6H01_03740) - 723363..723752 (+) 390 WP_106378927.1 transposase -
  I6H01_RS26455 - 724024..724389 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  I6H01_RS03750 (I6H01_03750) tmaR 724490..724819 (-) 330 WP_000450409.1 DUF496 family protein -
  I6H01_RS03755 (I6H01_03755) yeeA 724991..726049 (-) 1059 WP_001200892.1 FUSC family protein -
  I6H01_RS03760 (I6H01_03760) sbmC 726247..726720 (-) 474 WP_001105382.1 DNA gyrase inhibitor SbmC -
  I6H01_RS03765 (I6H01_03765) dacD 726839..728005 (-) 1167 WP_038341343.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6H01_RS03770 (I6H01_03770) sbcB 728214..729641 (+) 1428 WP_001471732.1 exodeoxyribonuclease I Machinery gene
  I6H01_RS03775 (I6H01_03775) plaP 729715..731073 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6H01_RS03780 (I6H01_03780) yoeI 731063..731125 (-) 63 WP_010723108.1 membrane protein YoeI -
  I6H01_RS03785 (I6H01_03785) yeeY 731340..732269 (-) 930 WP_038341341.1 LysR substrate-binding domain-containing protein -
  I6H01_RS03790 (I6H01_03790) yeeZ 732315..733139 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  I6H01_RS03795 (I6H01_03795) yoeB 733222..733476 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  I6H01_RS03800 (I6H01_03800) yefM 733473..733724 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  I6H01_RS03805 (I6H01_03805) hisL 734007..734057 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54497.81 Da        Isoelectric Point: 5.4700

>NTDB_id=450211 I6H01_RS03770 WP_001471732.1 728214..729641(+) (sbcB) [Escherichia coli strain FDAARGOS_944]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQVYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=450211 I6H01_RS03770 WP_001471732.1 728214..729641(+) (sbcB) [Escherichia coli strain FDAARGOS_944]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGCATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGTCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581