Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   FOC62_RS08720 Genome accession   NZ_CP054017
Coordinates   1713821..1714486 (-) Length   221 a.a.
NCBI ID   WP_002452060.1    Uniprot ID   -
Organism   Staphylococcus warneri strain FDAARGOS_754     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1708821..1719486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC62_RS08700 (FOC62_08715) - 1708933..1709934 (-) 1002 WP_002452064.1 DUF4064 domain-containing protein -
  FOC62_RS08705 (FOC62_08720) - 1710057..1712051 (-) 1995 WP_243590420.1 FtsX-like permease family protein -
  FOC62_RS08710 (FOC62_08725) - 1712069..1712815 (-) 747 WP_002452062.1 ABC transporter ATP-binding protein -
  FOC62_RS08715 (FOC62_08730) braS 1712919..1713815 (-) 897 WP_002452061.1 HAMP domain-containing sensor histidine kinase Regulator
  FOC62_RS08720 (FOC62_08735) braR 1713821..1714486 (-) 666 WP_002452060.1 response regulator transcription factor Regulator
  FOC62_RS08725 (FOC62_08740) - 1714508..1714666 (-) 159 WP_002452059.1 hypothetical protein -
  FOC62_RS08730 (FOC62_08745) - 1714921..1716375 (+) 1455 WP_002452058.1 alkaline phosphatase -
  FOC62_RS08735 (FOC62_08750) - 1716458..1716559 (-) 102 WP_015364644.1 SE2200 family small protein -
  FOC62_RS08740 (FOC62_08755) - 1716738..1718201 (-) 1464 WP_002452057.1 poly-gamma-glutamate hydrolase family protein -
  FOC62_RS08745 (FOC62_08760) - 1718438..1718887 (-) 450 WP_002452056.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25445.50 Da        Isoelectric Point: 4.9540

>NTDB_id=450204 FOC62_RS08720 WP_002452060.1 1713821..1714486(-) (braR) [Staphylococcus warneri strain FDAARGOS_754]
MKILIVEDDLVIAESLANELKNWNYDVKLAKQFSHILDDFKSYLPDLVLLDINLPTLNGFHWCQEIRKISNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTVAKVQALLRRTYDLAVSNNELNVKGCQLIADEAKLMFQGELTQLSLTELQIIK
LLFQNEGKFVNRTALIEKCWESENYIDDNTLAVNMTRLRKKLNQIGLTDFIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=450204 FOC62_RS08720 WP_002452060.1 1713821..1714486(-) (braR) [Staphylococcus warneri strain FDAARGOS_754]
ATGAAGATTTTGATAGTAGAAGATGATTTAGTCATTGCAGAAAGTTTAGCAAATGAACTTAAGAATTGGAACTATGACGT
TAAGTTGGCAAAACAGTTTTCTCATATTTTAGATGATTTCAAAAGCTATCTACCTGACTTAGTACTACTAGATATTAATT
TACCTACTTTAAATGGATTCCATTGGTGCCAAGAAATTAGAAAAATATCAAACGTACCTATTATATTTATCAGTTCACGG
ACGGATAATATGGATCAAATTATGGCGATTCAAATGGGTGGCGATGATTTTATTGAGAAACCATTCAATTTATCGTTAAC
AGTTGCAAAAGTACAAGCTTTATTACGTCGAACTTATGATTTAGCTGTATCCAATAACGAATTAAATGTTAAAGGATGTC
AACTGATTGCTGATGAGGCAAAGTTAATGTTCCAAGGTGAGTTGACACAACTGTCTTTAACGGAACTTCAAATCATTAAA
CTGTTGTTTCAAAATGAAGGGAAATTTGTGAATCGAACAGCTCTGATTGAAAAATGTTGGGAATCAGAAAATTATATTGA
TGATAATACTTTGGCAGTGAACATGACACGATTACGAAAAAAATTAAATCAAATTGGCTTAACAGATTTTATTGAAACGA
AGAAAAATGTGGGTTATAGGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(149-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

79.638

100

0.796