Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   FOC62_RS05635 Genome accession   NZ_CP054017
Coordinates   1100307..1101023 (+) Length   238 a.a.
NCBI ID   WP_002452008.1    Uniprot ID   -
Organism   Staphylococcus warneri strain FDAARGOS_754     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1095307..1106023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC62_RS05600 (FOC62_05610) - 1095791..1096417 (+) 627 WP_002451574.1 nitroreductase family protein -
  FOC62_RS05605 (FOC62_05615) - 1096534..1097319 (+) 786 WP_002451573.1 carbon-nitrogen family hydrolase -
  FOC62_RS05610 (FOC62_05620) - 1097733..1097810 (-) 78 WP_015364841.1 delta-lysin family phenol-soluble modulin -
  FOC62_RS05615 (FOC62_05625) - 1097877..1097954 (-) 78 WP_015364840.1 delta-lysin family phenol-soluble modulin -
  FOC62_RS05620 (FOC62_05630) - 1098271..1098834 (+) 564 WP_002451572.1 accessory gene regulator AgrB -
  FOC62_RS05625 (FOC62_05635) agrD 1098839..1098979 (+) 141 WP_002451571.1 cyclic lactone autoinducer peptide AgrD -
  FOC62_RS05630 (FOC62_05640) agrC 1099005..1100294 (+) 1290 WP_049425306.1 quorum-sensing sensor histidine kinase AgrC -
  FOC62_RS05635 (FOC62_05645) agrA 1100307..1101023 (+) 717 WP_002452008.1 quorum-sensing response regulator AgrA Regulator
  FOC62_RS05640 (FOC62_05650) - 1101082..1102038 (-) 957 WP_002452009.1 carbohydrate kinase -
  FOC62_RS05645 (FOC62_05655) - 1102035..1103519 (-) 1485 WP_002452010.1 sucrose-6-phosphate hydrolase -
  FOC62_RS05650 (FOC62_05660) - 1103821..1104771 (-) 951 WP_002452011.1 LacI family DNA-binding transcriptional regulator -
  FOC62_RS05655 (FOC62_05665) - 1104911..1105135 (-) 225 WP_002452012.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27887.88 Da        Isoelectric Point: 5.9175

>NTDB_id=450198 FOC62_RS05635 WP_002452008.1 1100307..1101023(+) (agrA) [Staphylococcus warneri strain FDAARGOS_754]
MKIFICEDDPKQRENMASIIKNYIMIEEKPMELALATDDPYEVLEQSKNMNDIGCYFLDIQLEADINGIKLGSEIRKHDS
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVINRRNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=450198 FOC62_RS05635 WP_002452008.1 1100307..1101023(+) (agrA) [Staphylococcus warneri strain FDAARGOS_754]
ATGAAAATATTCATTTGCGAAGATGATCCAAAACAACGAGAAAATATGGCGTCCATTATTAAAAATTACATTATGATTGA
AGAGAAGCCTATGGAGCTTGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCCAAAAATATGAATGACATCG
GTTGTTATTTCTTAGATATACAACTTGAAGCAGATATAAATGGTATTAAATTAGGTAGTGAAATTCGAAAACATGATTCT
GTAGGTAATATCATTTTTGTAACAAGCCATAGTGAATTAACGTATCTCACTTTCGTTTATAAAGTCGCTGCAATGGATTT
TATATTCAAAGATGATCCTGCAGAACTGAAAACACGTATTATCGATTGTTTAGAAACAGCTCACACAAGACTCAAATTAT
TATCCAAAGAAAGTAATGTAGAAACAATTGAGTTGAAACGTGGTAGTAATTCAGTTTATGTACAATATGACGATATCATG
TTTTTTGAATCATCTAGTAAATCACATCGTTTAATTGCACATTTAGATAATAGACAAATCGAATTTTATGGTAACCTTAA
AGAATTAAGTCAATTAGATGACCGTTTCTTTAGATGTCATAATAGCTTTGTGATTAATCGGAGAAATATTGAATCCATTG
ATTCTAAAGAGCGTATTGTCTATTTTAAAAATAAAGAACACTGTTATGCATCTGTTCGTAATGTCAAAAAGATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

93.277

100

0.933