Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   I6H03_RS05920 Genome accession   NZ_CP065607
Coordinates   1101326..1102318 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain FDAARGOS_946     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1096326..1107318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H03_RS05895 (I6H03_05900) pphB 1097688..1098344 (+) 657 WP_001141350.1 protein-serine/threonine phosphatase -
  I6H03_RS05900 (I6H03_05905) - 1098385..1098621 (-) 237 WP_000562982.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  I6H03_RS05905 (I6H03_05910) - 1098632..1100059 (-) 1428 WP_000863205.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  I6H03_RS05910 (I6H03_05915) - 1100059..1100652 (-) 594 WP_000767724.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  I6H03_RS05915 (I6H03_05920) - 1100799..1101206 (+) 408 WP_001208062.1 MarR family transcriptional regulator -
  I6H03_RS05920 (I6H03_05925) rpoS 1101326..1102318 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  I6H03_RS05925 (I6H03_05930) nlpD 1102381..1103475 (-) 1095 WP_349771508.1 murein hydrolase activator NlpD -
  I6H03_RS05930 (I6H03_05935) pcm 1103660..1104286 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  I6H03_RS05935 (I6H03_05940) surE 1104280..1105041 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  I6H03_RS05940 (I6H03_05945) truD 1105022..1106071 (-) 1050 WP_000568934.1 tRNA pseudouridine(13) synthase TruD -
  I6H03_RS05945 (I6H03_05950) ispF 1106068..1106547 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  I6H03_RS05950 (I6H03_05955) ispD 1106547..1107257 (-) 711 WP_000246159.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=450140 I6H03_RS05920 WP_000081550.1 1101326..1102318(-) (rpoS) [Escherichia coli strain FDAARGOS_946]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=450140 I6H03_RS05920 WP_000081550.1 1101326..1102318(-) (rpoS) [Escherichia coli strain FDAARGOS_946]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715