Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FIU22_RS03715 Genome accession   NZ_CP054012
Coordinates   839712..841082 (+) Length   456 a.a.
NCBI ID   WP_036610374.1    Uniprot ID   A0AB34LCH7
Organism   Parabacteroides distasonis strain FDAARGOS_759     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 834712..846082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU22_RS03700 (FIU22_03700) - 835054..835926 (-) 873 WP_122268556.1 arginase family protein -
  FIU22_RS03705 (FIU22_03705) - 836099..838351 (+) 2253 WP_172618147.1 GH92 family glycosyl hydrolase -
  FIU22_RS20760 - 838412..838546 (-) 135 WP_005858250.1 hypothetical protein -
  FIU22_RS03710 (FIU22_03710) - 838680..839678 (+) 999 WP_008778111.1 isoaspartyl peptidase/L-asparaginase family protein -
  FIU22_RS03715 (FIU22_03715) radA 839712..841082 (+) 1371 WP_036610374.1 DNA repair protein RadA Machinery gene
  FIU22_RS03720 (FIU22_03720) - 841096..842700 (+) 1605 WP_008774174.1 NAD(P)/FAD-dependent oxidoreductase -
  FIU22_RS03725 (FIU22_03725) - 842718..843839 (+) 1122 WP_254357384.1 glycoside hydrolase family 43 protein -
  FIU22_RS03730 (FIU22_03730) - 843833..844222 (-) 390 WP_008774176.1 hypothetical protein -
  FIU22_RS03735 (FIU22_03735) - 844235..845044 (-) 810 WP_008779516.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49841.66 Da        Isoelectric Point: 6.6073

>NTDB_id=450100 FIU22_RS03715 WP_036610374.1 839712..841082(+) (radA) [Parabacteroides distasonis strain FDAARGOS_759]
MAKTKTVYVCSNCGADSPKWLGKCPNCGEWNTYVEEIVTKEPAVKRPVPGIMEGNKIRPVLLRDITTEEEARIDLKDDEL
NRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLGLTGLKTLYVSGEESSRQLKLRADRLSHDNPNCFILCETHLEQIFTQ
AANIQPDLMIIDSIQTIFTEVVESSPGSVSQVRECSAAILKYAKESGVPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEG
DQHYMYRILRSIKNRFGSTAELGIYEMRQNGLREVSNPSELLLTQNHEGLSGVAIAAAIEGVRPFLIETQALVSSAVYGT
PQRSATGFDLRRMNMLLAVLEKRAGFKLIQKDVFLNIAGGLKVNDPAIDLAVISSILSSSLDISIEPGICMAGEVGLSGE
IRPVNRIEQRILEAEKLGFSRIIIPHNNLKGFDTAKSKIQIVQVKKVEEAFRQLFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=450100 FIU22_RS03715 WP_036610374.1 839712..841082(+) (radA) [Parabacteroides distasonis strain FDAARGOS_759]
ATGGCGAAAACAAAAACCGTATATGTCTGCTCTAACTGTGGCGCTGATTCCCCGAAATGGCTGGGTAAATGCCCGAATTG
TGGGGAGTGGAACACCTATGTGGAGGAGATCGTAACGAAGGAGCCTGCCGTGAAGCGGCCAGTTCCCGGTATTATGGAGG
GCAATAAGATCCGTCCGGTGTTATTGCGTGATATAACGACGGAAGAGGAGGCCCGTATCGATTTAAAAGATGATGAATTA
AACAGGGTCCTCGGCGGAGGCTTGGTAAAAGGCTCTTTGGTCTTGATCGGGGGAGAGCCGGGAATCGGAAAATCCACCTT
GGTCTTGCAAACCGTGTTGGGCTTGACAGGCTTGAAAACCCTATATGTCTCGGGCGAGGAGAGCAGTCGCCAGTTGAAAC
TCCGGGCGGACCGATTATCGCATGATAATCCGAACTGTTTCATCTTATGCGAGACACATCTGGAACAGATTTTTACGCAA
GCGGCCAATATCCAGCCGGACTTGATGATCATAGATTCCATACAAACCATCTTTACGGAAGTCGTGGAATCTTCCCCCGG
CAGTGTTTCCCAAGTACGCGAGTGTAGCGCCGCTATCTTGAAATACGCCAAGGAAAGCGGTGTCCCGGTCTTATTGATCG
GCCATATCAATAAGGAAGGCAGTATCGCCGGTCCGAAGGTATTGGAGCATATCGTGGATACGGTGTTGCAGTTTGAGGGC
GATCAGCATTATATGTATCGTATCCTGCGGAGCATCAAGAACCGTTTTGGCAGTACGGCGGAACTAGGGATTTACGAGAT
GCGCCAGAACGGGCTTCGTGAGGTCAGCAATCCATCCGAGTTATTATTAACCCAGAATCATGAGGGACTGAGCGGTGTCG
CCATCGCCGCCGCTATCGAGGGGGTACGTCCTTTCTTGATCGAGACGCAAGCCTTGGTCAGCTCGGCGGTTTACGGTACG
CCGCAACGTAGCGCCACCGGATTCGATTTACGCCGAATGAATATGTTATTGGCGGTATTGGAGAAAAGGGCGGGTTTTAA
GTTGATCCAGAAAGATGTTTTCCTGAATATCGCCGGAGGTTTGAAAGTGAATGATCCGGCTATCGATTTGGCGGTAATCA
GTTCCATCCTTTCCTCTAGCTTGGATATCAGCATCGAGCCGGGTATTTGTATGGCCGGAGAGGTAGGCTTGTCCGGAGAG
ATCCGTCCGGTCAACCGTATTGAGCAACGTATCTTGGAGGCGGAGAAGCTGGGTTTCTCCCGGATTATCATTCCGCATAA
TAATCTAAAAGGTTTCGATACGGCGAAAAGTAAGATCCAAATCGTACAGGTAAAGAAAGTGGAGGAAGCCTTTCGGCAAC
TATTCGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(342-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.838

100

0.531
  radA Streptococcus mitis NCTC 12261

49.234

100

0.493
  radA Streptococcus pneumoniae Rx1

49.015

100

0.491
  radA Streptococcus pneumoniae D39

49.015

100

0.491
  radA Streptococcus pneumoniae R6

49.015

100

0.491
  radA Streptococcus pneumoniae TIGR4

49.015

100

0.491
  radA Streptococcus mitis SK321

49.015

100

0.491