Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FIU21_RS01635 Genome accession   NZ_CP054010
Coordinates   419840..421240 (+) Length   466 a.a.
NCBI ID   WP_004359554.1    Uniprot ID   A0A7D4FSF4
Organism   Prevotella melaninogenica strain FDAARGOS_760     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 414840..426240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU21_RS01620 (FIU21_01620) - 415933..416547 (-) 615 WP_004359548.1 DNA alkylation repair protein -
  FIU21_RS01625 (FIU21_01625) - 416647..418821 (-) 2175 WP_004359550.1 tetratricopeptide repeat protein -
  FIU21_RS01630 (FIU21_01630) - 418856..419776 (-) 921 WP_004359552.1 ABC transporter substrate-binding protein -
  FIU21_RS01635 (FIU21_01635) radA 419840..421240 (+) 1401 WP_004359554.1 DNA repair protein RadA Machinery gene
  FIU21_RS01640 (FIU21_01640) ribH 421671..422147 (-) 477 WP_004359555.1 6,7-dimethyl-8-ribityllumazine synthase -
  FIU21_RS01645 (FIU21_01645) - 422154..422828 (-) 675 WP_004359557.1 tol-pal system YbgF family protein -
  FIU21_RS01650 (FIU21_01650) - 423128..424234 (+) 1107 WP_004359559.1 DNA replication/repair protein RecF -
  FIU21_RS01655 (FIU21_01655) - 424238..424528 (+) 291 WP_004359561.1 DciA family protein -
  FIU21_RS01660 (FIU21_01660) dapA 425056..425940 (-) 885 WP_004359564.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 50877.22 Da        Isoelectric Point: 6.3732

>NTDB_id=450092 FIU21_RS01635 WP_004359554.1 419840..421240(+) (radA) [Prevotella melaninogenica strain FDAARGOS_760]
MAKDKIAFVCSNCGQESPKWIGKCPNCGQWNTFKEFRIAADTGSQAARNAATTLRNAASGGSVSALANKPQRLRDISSHD
DPRIDMHDGELNRVLGGGLVPGSIVLLGGEPGIGKSTLTLQTILHMTQRVLYVSGEESPHQIKMRAERISKDIAENIIIL
SETSLEHIFEHIRDVQPELVVIDSIQTISTEDVDSSPGNITQVRECASALLRFAKTSGVPVILIGHINKEGSIAGPKILE
HIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMEQQGLREVSNPSELLLTEDHEGLSGVAISSTIEGARPFLVET
QALVSSAAYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLRVTDMAMDLSVIAAVLSSNVDTPIEQGW
CMCGEVGLSGEVRPISRIEQRIAEAEKLGFSHIIIPKYNLSGLTGKYNIQLHPVRKVEEALRALFG

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=450092 FIU21_RS01635 WP_004359554.1 419840..421240(+) (radA) [Prevotella melaninogenica strain FDAARGOS_760]
ATGGCAAAGGACAAGATAGCTTTCGTCTGCAGTAATTGTGGACAGGAAAGTCCAAAATGGATTGGTAAATGCCCCAACTG
TGGGCAGTGGAACACATTCAAGGAGTTCCGTATCGCTGCTGATACGGGTTCACAAGCTGCACGCAATGCCGCAACAACAT
TGCGCAATGCGGCTTCTGGCGGCTCTGTTTCGGCTTTAGCAAATAAGCCACAGCGTCTCCGTGACATTTCATCTCACGAT
GACCCACGCATAGACATGCACGATGGTGAACTTAACCGTGTGTTAGGTGGCGGCTTGGTACCGGGTAGTATCGTACTACT
TGGTGGCGAACCCGGTATTGGTAAGAGTACGCTGACACTGCAGACAATACTCCACATGACGCAACGTGTACTCTATGTCA
GCGGTGAGGAAAGTCCTCATCAGATAAAGATGCGTGCCGAACGTATTTCCAAAGATATTGCAGAAAACATCATTATCTTG
TCGGAAACATCCTTAGAACATATTTTTGAGCATATTCGTGACGTACAGCCAGAGCTTGTTGTGATAGACTCAATCCAGAC
TATCTCAACAGAAGACGTTGACAGTAGTCCCGGAAACATTACTCAAGTACGCGAATGTGCATCAGCTCTTCTACGCTTTG
CCAAGACAAGTGGCGTTCCTGTGATTCTCATTGGACATATCAATAAAGAGGGAAGCATTGCTGGACCAAAGATATTAGAG
CATATTGTTGACACCGTGATTCAGTTTGAAGGCGATCAACATTATATGTATCGAATCCTCCGAAGCATAAAAAACCGCTT
TGGTTCTACTTCAGAACTCGGTATTTATGAGATGGAACAGCAGGGACTTCGTGAGGTTAGCAACCCTTCCGAACTTCTTC
TTACGGAAGACCATGAGGGATTATCGGGTGTTGCTATCTCAAGTACTATCGAAGGTGCACGTCCTTTCCTTGTTGAGACA
CAAGCACTTGTATCATCAGCTGCCTATGGAACTCCACAGCGTTCAGCCACAGGTTTCGACCAAAGACGCCTTAACATGCT
CCTCGCTGTATTAGAGAAACGTGTCGGTTTTAAGCTGATGCAGAAGGATGTCTTCCTGAACATTGCAGGTGGTTTACGTG
TGACAGACATGGCGATGGACCTCAGTGTCATTGCTGCCGTACTTTCATCGAATGTTGACACACCAATAGAACAAGGCTGG
TGTATGTGTGGTGAGGTCGGATTGAGTGGCGAAGTACGTCCTATCAGCCGTATTGAGCAGCGCATTGCAGAAGCTGAGAA
ATTAGGTTTTAGCCATATCATTATTCCAAAGTATAACCTTTCAGGACTTACAGGTAAGTACAATATACAACTTCACCCCG
TAAGAAAGGTTGAAGAAGCACTCAGAGCATTGTTTGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(88-231)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D4FSF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.68

100

0.5
  radA Streptococcus mitis SK321

45.396

100

0.455
  radA Streptococcus mitis NCTC 12261

45.396

100

0.455
  radA Streptococcus pneumoniae Rx1

45.396

100

0.455
  radA Streptococcus pneumoniae D39

45.396

100

0.455
  radA Streptococcus pneumoniae R6

45.396

100

0.455
  radA Streptococcus pneumoniae TIGR4

45.396

100

0.455