Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOC68_RS10665 Genome accession   NZ_CP054006
Coordinates   2115493..2116866 (+) Length   457 a.a.
NCBI ID   WP_002449047.1    Uniprot ID   -
Organism   Staphylococcus hominis strain FDAARGOS_762     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2110493..2121866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC68_RS10645 (FOC68_10675) - 2110818..2111279 (+) 462 WP_002449017.1 CtsR family transcriptional regulator -
  FOC68_RS10650 (FOC68_10680) - 2111311..2111874 (+) 564 WP_002449058.1 UvrB/UvrC motif-containing protein -
  FOC68_RS10655 (FOC68_10685) - 2111867..2112874 (+) 1008 WP_002449052.1 protein arginine kinase -
  FOC68_RS10660 (FOC68_10690) - 2112890..2115361 (+) 2472 WP_002449044.1 ATP-dependent Clp protease ATP-binding subunit -
  FOC68_RS10665 (FOC68_10695) radA 2115493..2116866 (+) 1374 WP_002449047.1 DNA repair protein RadA Machinery gene
  FOC68_RS10670 (FOC68_10700) - 2116889..2117959 (+) 1071 WP_002449026.1 PIN/TRAM domain-containing protein -
  FOC68_RS10675 (FOC68_10705) gltX 2118240..2119694 (+) 1455 WP_002449039.1 glutamate--tRNA ligase -
  FOC68_RS10680 (FOC68_10710) cysE 2120078..2120707 (+) 630 WP_172457920.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50454.82 Da        Isoelectric Point: 7.2139

>NTDB_id=450091 FOC68_RS10665 WP_002449047.1 2115493..2116866(+) (radA) [Staphylococcus hominis strain FDAARGOS_762]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIIEKTSNPKHGVKTKETQAKVQKLNSIKHETTPRVQTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLEEDSSNLNVLAETDLEVIHQTVE
QERPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQSLVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSIIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPKTNIGGWTFPEDVQVVGVTTVHDALKYAFSNRSS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=450091 FOC68_RS10665 WP_002449047.1 2115493..2116866(+) (radA) [Staphylococcus hominis strain FDAARGOS_762]
TTGGCCAAGAAAAAAGTAATTTTCGAATGTATGGCTTGTGGATATCAGTCTCCTAAATGGATGGGAAAATGTCCAAATTG
TGGTGCTTGGAATCAAATGGAGGAAATTATTGAAAAGACTTCCAATCCAAAACATGGTGTAAAGACAAAAGAGACACAAG
CAAAAGTACAGAAATTAAATAGTATTAAGCATGAGACAACACCAAGAGTTCAAACGGACTCTAAAGAATTTAATCGTGTA
CTGGGTGGCGGAATTGTTAGTGGATCGCTCGTACTGATTGGCGGCGACCCAGGTATTGGGAAATCTACATTATTATTACA
GATTTGTGCATCGTTATCACAGAAACTTAATGTACTTTATATCACGGGTGAAGAATCACTAAATCAAACGAAATTGCGTG
CAGATCGTCTAGAGGAAGACTCTAGTAATTTAAATGTACTAGCTGAAACAGATTTAGAAGTTATTCATCAAACCGTGGAA
CAAGAGCGCCCAGATATACTTGTTGTCGATTCAATTCAAACGATTTATCATCCTGAGATTAGTTCAGCACCTGGCTCAGT
ATCACAAGTTCGAGAAAGTACACAAAGTTTAATGAATATTGCAAAACAAATGAATATCGCAACTTTTATAGTAGGTCACG
TAACAAAAGAAGGACAAATTGCTGGTCCAAGACTATTAGAACATATGGTAGATACAGTTTTATACTTCGAAGGTGATGAA
CACCATGCTTATCGAATTCTAAGAGCAGTTAAAAATCGTTTTGGTTCAACGAATGAAATGGGTATTTTTGAAATGAAACA
AAGTGGTTTGAAAGGTGTACAAAATCCTTCAGAAATGTTTTTAGAAGAACGCTCTACAAATGTTCCAGGATCAACAATTG
TGGCTACTATGGAAGGCACACGACCACTATTGATTGAGGTGCAATCTCTAGTAACACCTACCACATTTAATAATCCAAGA
CGAATGGCCACAGGCATCGACCACAATCGACTTAGTTTGCTTATGGCTGTTTTAGAGAAAAAAGAAAATTATCTTTTACA
ACAACAAGATGCTTACATTAAAGTAGCGGGTGGAGTGAGATTGACTGAACCGGCTGTAGATTTAAGTATTATTGTAGCGA
CTGCTTCAAGTTTTAAAGATAAAGCCGTAGATGGTTTGGATTGTTATATTGGTGAAGTGGGATTAACTGGTGAAGTAAGA
CGAGTATCGCGTATTGAGCAACGTGTACAAGAAGCGGCAAAACTAGGATTTAAGAGAGTGATTATTCCCAAAACGAATAT
AGGTGGATGGACATTCCCAGAAGATGTTCAGGTCGTTGGCGTGACAACGGTACATGATGCCTTAAAATATGCGTTTAGTA
ATCGCTCATCATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(355-426)

AAA domain (AAA_25)

(74-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

99.781

0.65
  radA Streptococcus pneumoniae Rx1

59.382

99.125

0.589
  radA Streptococcus pneumoniae D39

59.382

99.125

0.589
  radA Streptococcus pneumoniae R6

59.382

99.125

0.589
  radA Streptococcus pneumoniae TIGR4

59.382

99.125

0.589
  radA Streptococcus mitis NCTC 12261

59.382

99.125

0.589
  radA Streptococcus mitis SK321

59.382

99.125

0.589