Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   I6H05_RS04505 Genome accession   NZ_CP065604
Coordinates   973832..974071 (-) Length   79 a.a.
NCBI ID   WP_025298523.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain FDAARGOS_948     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 968832..979071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H05_RS04490 (I6H05_04490) - 969512..969949 (+) 438 WP_025298520.1 DNA polymerase III subunit psi -
  I6H05_RS04495 (I6H05_04495) rimI 969959..970402 (+) 444 WP_025298521.1 ribosomal protein S18-alanine N-acetyltransferase -
  I6H05_RS04500 (I6H05_04500) recC 970404..973820 (-) 3417 WP_038573224.1 exodeoxyribonuclease V subunit gamma -
  I6H05_RS04505 (I6H05_04505) comQ 973832..974071 (-) 240 WP_025298523.1 DUF5374 domain-containing protein Machinery gene
  I6H05_RS04510 (I6H05_04510) comO 974037..974735 (-) 699 WP_038573332.1 type II secretion system protein J Machinery gene
  I6H05_RS04515 (I6H05_04515) comN 974722..975243 (-) 522 WP_005573910.1 type II secretion system protein Machinery gene
  I6H05_RS04535 (I6H05_04535) pal 975948..976415 (-) 468 WP_025298525.1 peptidoglycan-associated lipoprotein Pal -
  I6H05_RS04540 (I6H05_04540) tolB 976430..977710 (-) 1281 WP_005567685.1 Tol-Pal system beta propeller repeat protein TolB -
  I6H05_RS04545 (I6H05_04545) tolA 977745..978953 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 9289.46 Da        Isoelectric Point: 9.2618

>NTDB_id=450085 I6H05_RS04505 WP_025298523.1 973832..974071(-) (comQ) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
MDVLNDINRSNNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRFQVICSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 240 bp        

>NTDB_id=450085 I6H05_RS04505 WP_025298523.1 973832..974071(-) (comQ) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
GTGGACGTTTTAAACGACATAAACAGATCGAATAACCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCA
GCGTTTTCAAGCCATCCAAATTGCCGAAAATCAGCATCAACGCCGTTTTCTCGGGTTGCCTTGTGAATCACAGGTGCAGC
AAAATCAAATTCGTTTTCAGGTGATTTGTTCGCAAAATCAGGTGTCGGTAAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(40-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.061

83.544

0.468