Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6H05_RS02000 Genome accession   NZ_CP065604
Coordinates   430858..432282 (+) Length   474 a.a.
NCBI ID   WP_005568939.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain FDAARGOS_948     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 425858..437282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H05_RS01995 (I6H05_01995) - 429972..430843 (+) 872 Protein_395 EamA family transporter -
  I6H05_RS02000 (I6H05_02000) sbcB 430858..432282 (+) 1425 WP_005568939.1 exodeoxyribonuclease I Machinery gene
  I6H05_RS02005 (I6H05_02005) - 432364..432703 (+) 340 Protein_397 transposase -
  I6H05_RS02010 (I6H05_02010) - 432996..433505 (+) 510 WP_196242648.1 IS3 family transposase -
  I6H05_RS02015 (I6H05_02015) - 433633..433878 (+) 246 WP_005562624.1 hypothetical protein -
  I6H05_RS02020 (I6H05_02020) - 433931..434149 (+) 219 Protein_400 type II secretion system protein GspD -
  I6H05_RS02025 (I6H05_02025) ftnA 434970..435455 (+) 486 WP_025298388.1 non-heme ferritin -
  I6H05_RS02030 (I6H05_02030) ftnA 435471..435968 (+) 498 WP_005544705.1 non-heme ferritin -
  I6H05_RS02035 (I6H05_02035) - 436030..436200 (-) 171 WP_005544707.1 hypothetical protein -
  I6H05_RS02040 (I6H05_02040) - 436309..437082 (+) 774 WP_005568756.1 FNR family transcription factor -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54834.36 Da        Isoelectric Point: 5.1197

>NTDB_id=450076 I6H05_RS02000 WP_005568939.1 430858..432282(+) (sbcB) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
MAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPEAVLVTGITPQECNEKGLSEPE
FAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPS
FRLEKLTEANGIAHDSAHDAMSDVYATIEMAKLIKRKQPKLFQYFFENRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGNT
TLIAPLAWHPTNKNAVIVCDLTADIDDLLTKSVGELRENLYTKKETLLAAGALPVPLKLIHINKCPIVAPAKTLLPQNAE
RLGIDQELCAQNRQRLQEAKDIRQKVMDIFHQEREFDASDNVETELYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDP
RIPELLFHYRARHFYRTLNRAEQIKWQKYCRKKLDAEALQFEQRLQELAEQYSNNEENLMLLQKVYEYGTKIIG

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=450076 I6H05_RS02000 WP_005568939.1 430858..432282(+) (sbcB) [Aggregatibacter actinomycetemcomitans strain FDAARGOS_948]
ATGGCAAAAAACGACTTTAGTTTTTTTATTTATGATTATGAAAGTTTTGGGGTCAATCCCGCAACGGATCGCCCGGCACA
ATTCGGTGGCATTCGCACTGACGAGGATTTTAATATTATCGGTGAGCCGATTGTTCTTTATTGCAAGCAAACTAACGATT
ATTTGCCTGCACCAGAAGCGGTTTTAGTCACCGGAATTACACCACAGGAATGCAACGAAAAAGGGCTGTCGGAACCCGAA
TTTGCCGCCAAAATTTTACAGGAATTCAGCCGTCCGAATACTTGCGTGATGGGCTTTAATAACATTCGTTATGACGATGA
AATGACCCGTTATACGTTTTACCGTAATTTTATCGATCCTTATGAATACAGCTGGAAAAACGGCAATTCCCGTTGGGATT
TACTGGATTTGGTGCGTGCTTGCTATGCGTTGCGCCCGGACGGTATTGAATGGCCTTTAGATGATGAAGGTATGCCGAGT
TTCCGCCTGGAAAAACTGACAGAGGCCAATGGAATAGCGCACGATAGTGCGCATGATGCCATGTCAGATGTGTATGCCAC
TATTGAAATGGCAAAGCTCATCAAGCGGAAACAGCCTAAATTATTCCAATATTTCTTTGAAAATCGGGGTAAAAAGGAGG
TTGAAAAGCTCATCGATACCGCAGAAATGATGCCATTGGTACATGTGTCGGGAATGTTGGGGAATTATCGCGGAAATACC
ACGTTAATTGCACCTTTAGCCTGGCATCCGACGAATAAAAATGCCGTTATTGTCTGTGATTTAACTGCCGATATTGATGA
TTTATTAACAAAATCGGTAGGGGAGTTGCGTGAAAATCTTTACACCAAAAAAGAGACCTTATTGGCTGCCGGTGCATTGC
CTGTGCCATTGAAGCTCATTCATATCAATAAATGTCCGATTGTTGCGCCGGCTAAAACTTTGTTGCCACAAAACGCCGAA
CGTTTAGGTATTGATCAGGAGTTATGTGCGCAAAACCGACAACGTTTGCAGGAAGCAAAAGATATTCGCCAAAAAGTAAT
GGATATTTTTCATCAGGAACGTGAATTTGACGCTTCCGATAATGTTGAAACCGAACTGTATAACGGCTTTTTTAGTGACG
CCGATAAAAACAATATGGCGATTTTACGCAGTTTGGAACCCGAAAAATTGGCTAAACATAATCTTAGTTTTCAAGATCCA
CGAATTCCTGAATTGCTGTTCCATTATCGTGCCAGACATTTCTATCGTACATTGAACCGTGCGGAACAAATTAAATGGCA
AAAATACTGCCGTAAAAAATTAGATGCCGAGGCTTTGCAATTTGAACAACGTCTTCAAGAATTAGCCGAACAATATTCCA
ACAATGAAGAAAATCTTATGTTATTGCAAAAGGTCTATGAATATGGAACGAAAATAATCGGTTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(209-470)

Exonuclease (RNase_T)

(10-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

53.863

98.312

0.53