Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   I5367_RS17140 Genome accession   NZ_CP065539
Coordinates   3496348..3497478 (-) Length   376 a.a.
NCBI ID   WP_007407584.1    Uniprot ID   A7Z9N9
Organism   Bacillus amyloliquefaciens strain DGL1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3491348..3502478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5367_RS17110 (I5367_17110) - 3492191..3492595 (-) 405 WP_007614341.1 Rrf2 family transcriptional regulator -
  I5367_RS17115 (I5367_17115) ureC 3492736..3494445 (-) 1710 WP_012118651.1 urease subunit alpha -
  I5367_RS17120 (I5367_17120) ureB 3494442..3494816 (-) 375 WP_012118652.1 urease subunit beta -
  I5367_RS17125 (I5367_17125) ureA 3494813..3495130 (-) 318 WP_007407581.1 urease subunit gamma -
  I5367_RS17130 (I5367_17130) - 3495484..3495672 (-) 189 WP_012118653.1 CsbD family protein -
  I5367_RS17135 (I5367_17135) - 3495747..3496226 (-) 480 WP_012118654.1 hypothetical protein -
  I5367_RS17140 (I5367_17140) rapC 3496348..3497478 (-) 1131 WP_007407584.1 tetratricopeptide repeat protein Regulator
  I5367_RS17145 (I5367_17145) moaA 3497669..3498694 (-) 1026 WP_012118655.1 GTP 3',8-cyclase MoaA -
  I5367_RS17150 (I5367_17150) fdhD 3498712..3499500 (-) 789 WP_012118656.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  I5367_RS17155 (I5367_17155) - 3499595..3499759 (-) 165 WP_007407587.1 hypothetical protein -
  I5367_RS17160 (I5367_17160) - 3499845..3500525 (-) 681 WP_012118657.1 VWA domain-containing protein -
  I5367_RS17165 (I5367_17165) - 3500835..3501521 (-) 687 WP_007407590.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44934.03 Da        Isoelectric Point: 5.3221

>NTDB_id=450057 I5367_RS17140 WP_007407584.1 3496348..3497478(-) (rapC) [Bacillus amyloliquefaciens strain DGL1]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=450057 I5367_RS17140 WP_007407584.1 3496348..3497478(-) (rapC) [Bacillus amyloliquefaciens strain DGL1]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTTCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ATCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(192-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z9N9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423
  rapF Bacillus subtilis subsp. subtilis str. 168

40

99.734

0.399