Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FOC71_RS09350 Genome accession   NZ_CP053999
Coordinates   1843198..1844958 (-) Length   586 a.a.
NCBI ID   WP_003074427.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838198..1849958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS09330 (FOC71_09330) - 1838982..1839707 (-) 726 WP_003074434.1 GntR family transcriptional regulator -
  FOC71_RS09335 (FOC71_09335) celB 1839741..1841009 (-) 1269 WP_003074433.1 PTS cellobiose transporter subunit IIC -
  FOC71_RS09340 (FOC71_09340) - 1841153..1842550 (+) 1398 WP_003074431.1 glycoside hydrolase family 1 protein -
  FOC71_RS09345 (FOC71_09345) - 1842679..1843113 (-) 435 WP_003074429.1 cupin domain-containing protein -
  FOC71_RS09350 (FOC71_09350) rcrQ 1843198..1844958 (-) 1761 WP_003074427.1 ABC transporter ATP-binding protein Regulator
  FOC71_RS09355 (FOC71_09355) rcrP 1844948..1846714 (-) 1767 WP_003074425.1 ABC transporter ATP-binding protein Regulator
  FOC71_RS09360 (FOC71_09360) - 1846707..1847165 (-) 459 WP_003074423.1 MarR family winged helix-turn-helix transcriptional regulator -
  FOC71_RS09365 (FOC71_09365) - 1847337..1848524 (-) 1188 WP_003074421.1 NADH-dependent flavin oxidoreductase -
  FOC71_RS09370 (FOC71_09370) - 1848790..1849200 (-) 411 WP_003074419.1 peptide deformylase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65187.27 Da        Isoelectric Point: 5.8509

>NTDB_id=450034 FOC71_RS09350 WP_003074427.1 1843198..1844958(-) (rcrQ) [Streptococcus intermedius strain FDAARGOS_769]
MENKKSSLFSQVEPYIKGFQFPLLVAFVGVILSSVITVYGPVKLKEITNLITEGMRSRIDLKAISNIALFLAVLYVVGAV
LNYMQSFIISSVVQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGTVISSSLLLIAVLFMM
FYNNVVLSFVTIGSVLIGFVFVALIMGKSQQFFRAQQENLASVNGYVEEMYSGHNVIVSYNATEESKKAFQMLNTNLYNS
MWKSQFISGIMMPLMIFTGNFGYVMVVLVGASMALNGDVTMGTIVAFMVYVRTFSQPLSQIAQGITTLQQASAAMGRVFE
FLAEPEMENDEHKSQQLTTLKGDVTFDNVFFGYNPDRTIIHDFSAKAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIEKGR
ITIDGVDTKQMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAATKAVGVHHFIKTLPKGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HDQLMEENGFYADLYNSQFDEEAEYA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=450034 FOC71_RS09350 WP_003074427.1 1843198..1844958(-) (rcrQ) [Streptococcus intermedius strain FDAARGOS_769]
ATGGAAAATAAAAAATCATCTTTATTTAGCCAAGTGGAACCCTATATCAAAGGATTCCAGTTTCCCTTGCTCGTTGCGTT
TGTGGGAGTAATACTATCTAGTGTTATCACGGTTTATGGTCCGGTCAAATTAAAAGAAATTACCAATCTCATCACAGAAG
GAATGAGAAGTCGGATTGATCTGAAGGCTATCTCTAATATTGCTCTTTTCTTAGCAGTTTTATATGTGGTGGGTGCTGTA
TTAAATTATATGCAATCCTTTATTATTTCGTCCGTCGTTCAGCATTTTTCAAAACGTTTACGGACAGCCATTGCGGAGAA
AATTAATAAATTACCCTTGCGGTATTTTGATAGTCATTCGCAAGGGGACACTCTTTCACGAGTCACTAATGACGTGGATA
CTGTCGGACAATCTTTGAACCAAAGTTTAGGAACAGTGATTTCATCAAGTTTGCTTCTCATTGCTGTTCTCTTTATGATG
TTTTATAACAACGTGGTTCTATCCTTTGTAACGATTGGATCGGTTTTGATTGGTTTTGTCTTTGTTGCGTTGATTATGGG
CAAATCACAACAGTTTTTCCGTGCACAACAAGAGAATCTTGCTAGTGTCAATGGATATGTGGAAGAGATGTATTCTGGTC
ACAATGTCATTGTCAGCTACAATGCTACCGAGGAATCAAAAAAAGCCTTTCAAATGCTTAATACGAATCTTTATAATAGT
ATGTGGAAGTCCCAATTTATTTCTGGGATTATGATGCCGTTAATGATATTTACAGGGAACTTCGGTTATGTTATGGTCGT
ATTGGTTGGAGCGAGCATGGCATTGAATGGTGATGTCACGATGGGGACGATTGTTGCCTTTATGGTATATGTACGGACTT
TTTCTCAACCATTGTCCCAAATTGCACAAGGGATTACTACTCTTCAACAAGCTAGTGCTGCTATGGGGCGTGTATTTGAG
TTTTTAGCAGAGCCGGAAATGGAAAACGATGAGCACAAGTCTCAACAGCTCACAACTTTAAAGGGTGATGTTACCTTTGA
TAATGTATTCTTTGGCTACAATCCGGATCGAACAATTATTCATGATTTTTCTGCCAAGGCAAAAGCCGGCCAAAAGATTG
CTATTGTTGGTCCGACCGGTGCTGGGAAAACGACCATTGTCAACTTGCTCATGAAATTTTATGAAATTGAGAAAGGGCGG
ATTACCATTGATGGTGTTGATACCAAGCAGATGAAACGTTCTGAAGTGCATGATGCTTTCTCAATGGTCCTTCAAGACAC
TTGGTTATTTGAGGGAACGATTAAAGAAAATTTGATTTACAATCAGAAGAATATTTCTGATGAAGCAGTTGTGGCAGCGA
CTAAAGCTGTCGGGGTTCATCACTTTATCAAGACTTTGCCAAAAGGATATGATACAGTGTTGGATGACACAGTCAGTCTT
TCTGTTGGGCAAAAGCAATTGCTAACTATCGCGCGTGCACTTCTTAAGGATGCTCCCTTACTTATCTTGGATGAAGCAAC
TTCGTCTGTTGATACGCGGACAGAAGAATTGATCCAAAAAGCGATGGATAAGTTGATGGAGGGAAGGACTTCTTTCGTCA
TTGCTCACCGCTTGTCGACCATTCGTAATGCTGATTTGATTTTGGTCATGCGTGATGGTAATATCATTGAACAAGGAAAT
CACGATCAATTGATGGAAGAAAATGGCTTCTATGCTGATCTTTACAATAGTCAATTCGATGAAGAGGCAGAGTATGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

71.821

99.317

0.713