Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FOC71_RS05125 Genome accession   NZ_CP053999
Coordinates   983770..985572 (+) Length   600 a.a.
NCBI ID   WP_003073291.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 978770..990572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS05105 (FOC71_05105) - 980469..980786 (+) 318 WP_003073299.1 PTS cellobiose transporter subunit IIA -
  FOC71_RS05110 (FOC71_05110) - 980809..981315 (+) 507 WP_003073297.1 hypothetical protein -
  FOC71_RS05115 (FOC71_05115) celB 981355..982698 (+) 1344 WP_003073295.1 PTS cellobiose transporter subunit IIC -
  FOC71_RS05120 (FOC71_05120) coiA 982787..983818 (+) 1032 WP_003073293.1 competence protein CoiA Machinery gene
  FOC71_RS05125 (FOC71_05125) pepF 983770..985572 (+) 1803 WP_003073291.1 oligoendopeptidase F Regulator
  FOC71_RS05130 (FOC71_05130) - 985574..986257 (+) 684 WP_003073289.1 O-methyltransferase -
  FOC71_RS05135 (FOC71_05135) prsA 986364..987302 (+) 939 WP_003073287.1 peptidylprolyl isomerase PrsA -
  FOC71_RS05140 (FOC71_05140) - 987441..988012 (+) 572 Protein_985 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69265.64 Da        Isoelectric Point: 4.6883

>NTDB_id=450017 FOC71_RS05125 WP_003073291.1 983770..985572(+) (pepF) [Streptococcus intermedius strain FDAARGOS_769]
MAKQRNEIEEKYTWDLTTIFPTDEAFEMELAQVSKELKEASHLAGHLLDSADSLLKTTAIQMDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMAIYSEFGQVFAFYEPEFMAIIDEQYQAFLAEKPELQVYQHFFDKLLQKKPHILSQREEELLAGA
GEIFSAAGDTFGILDNADIVFPIVHDEEGNEVQLTHGNYISLVEAKNRTVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSANFIPESVYESLVSAVNKHLPLLHRYVQLRAKILGISDLKMYDVYTPLSEIDYKFTYEAALT
KAEEVLAILGDDYLNRVKKAFSERWIDVCENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVDDDQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNDLYADLNEKYYGLTKEDNPQIQYEWARIPHFYYDYYVFQYATGFSAASALADKIVNGTQEDKEKYLHYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=450017 FOC71_RS05125 WP_003073291.1 983770..985572(+) (pepF) [Streptococcus intermedius strain FDAARGOS_769]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATATACTTGGGATTTAACAACGATTTTCCCAACAGATGAAGCGTTTGA
AATGGAATTAGCGCAAGTTTCAAAGGAATTAAAAGAAGCTAGTCATTTAGCAGGTCATCTTTTGGATTCAGCCGATAGCC
TTTTAAAAACGACAGCCATCCAAATGGATTTAATGCGTCGCATTGAAAAGCTCTATTCCTATGCTCACATGAAAAATGAC
CAAGATACGCGTGTGGCAAAATATCAAGAGTATCAAGCTAAGGGCATGGCTATTTATAGCGAGTTCGGGCAGGTGTTTGC
TTTCTATGAGCCAGAATTTATGGCAATTATAGATGAACAGTATCAGGCTTTCTTAGCTGAAAAACCTGAATTGCAAGTCT
ATCAGCACTTCTTTGACAAGTTATTGCAAAAGAAACCTCACATCCTTTCTCAACGTGAGGAAGAATTGTTGGCAGGTGCT
GGTGAAATTTTTAGTGCCGCTGGTGATACTTTTGGAATTTTGGATAATGCCGATATCGTTTTTCCAATTGTACATGACGA
GGAAGGCAATGAAGTACAATTAACGCATGGAAATTACATTAGCTTAGTGGAGGCAAAAAATCGTACAGTCCGTAAGGAAG
CTTATGAAGCACTTTATAGTGTTTATGAGCAATATCAACATACTTATGCTAAGACACTTCAAACAAATGTTAAAGTGCAT
AATTACAATGCAAAAGTACGTAAGTTTTCTTCAGCACGCGAAGCAGCCTTGTCTGCTAACTTTATTCCAGAAAGTGTTTA
TGAGAGTTTGGTATCTGCAGTCAACAAACATTTACCACTCTTACATCGCTATGTTCAGTTACGAGCTAAGATTTTAGGCA
TTTCAGATCTCAAGATGTATGACGTTTATACACCGCTATCAGAGATAGATTATAAATTTACCTATGAAGCAGCTTTGACG
AAAGCGGAAGAAGTTTTAGCAATTCTTGGAGATGATTATCTTAACCGAGTGAAAAAAGCCTTTTCAGAGCGTTGGATTGA
TGTTTGTGAGAATCAAGGTAAACGGTCAGGAGCTTATTCTGGTGGCTCTTACGATACTAATGCTTTTATGTTGCTGAATT
GGCAAGATACCTTAGATAATCTCTTCACCTTGGTTCATGAAACGGGTCATAGTATGCATTCTAGCTATACTCGTGAAACA
CAGCCTTATGTTTATGGTGATTATTCTATTTTCTTAGCTGAGATTGCTTCTACTACCAATGAAAATATACTGACGGAGAA
ATTATTGGAAGAAGTAGATGACGATCAAACTCGTTTTGCGATTCTGAATCATTTCTTGGATGGCTTCCGCGGAACTGTTT
TCCGCCAAACTCAATTTGCTGAGTTTGAGCATGCTATCCATAAGGCTGATCAAGAAGGTCAGGTCTTAACTAGTGAATTT
TTGAATGATTTATACGCAGATTTGAATGAAAAATATTATGGCTTGACGAAAGAAGATAATCCACAAATTCAATATGAATG
GGCACGGATTCCGCATTTTTACTATGACTATTATGTATTTCAATATGCGACTGGTTTTTCAGCAGCATCTGCTTTAGCTG
ATAAAATTGTCAATGGAACACAAGAAGATAAAGAGAAATATCTCCATTATCTCAAAGCAGGAAATTCTGATTATCCGCTG
AATGTCATTAAAAAAGCTGGTGTTGATATGGAAAAAGAAGACTATCTCAATGCTGCCTTTGCAGTCTTTGAACGTCGTCT
TGATGAATTTGAAGCACTTGTAGAAAAGTTAGGCTTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.792

99.333

0.683