Detailed information NTG0450001

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: FOC71_RS02955
• Genome accession: NZ_CP053999
• Coordinates: 554611..557040 (+)
• Length: 809 a.a.
• NCBI ID: WP_003074770.1
• Uniprot ID: -
• Organism: Streptococcus intermedius strain FDAARGOS_769
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 549611..562040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOC71_RS02925 (FOC71_02925)	-	550645..550902 (+)	258	WP_003074780.1	hypothetical protein	-
FOC71_RS02935 (FOC71_02935)	rpsB	551552..552334 (+)	783	WP_003074779.1	30S ribosomal protein S2	-
FOC71_RS02940 (FOC71_02940)	tsf	552417..553460 (+)	1044	WP_003074777.1	translation elongation factor Ts	-
FOC71_RS02945 (FOC71_02945)	-	553537..553887 (-)	351	WP_003074775.1	hypothetical protein	-
FOC71_RS02950 (FOC71_02950)	-	554146..554607 (+)	462	WP_003074772.1	CtsR family transcriptional regulator	-
FOC71_RS02955 (FOC71_02955)	clpC	554611..557040 (+)	2430	WP_003074770.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
FOC71_RS02960 (FOC71_02960)	-	557087..557527 (+)	441	WP_003074768.1	GNAT family N-acetyltransferase	-
FOC71_RS02965 (FOC71_02965)	dusB	557598..558569 (-)	972	WP_003074765.1	tRNA dihydrouridine synthase DusB	-
FOC71_RS02970 (FOC71_02970)	hslO	558556..559428 (-)	873	WP_037584643.1	Hsp33 family molecular chaperone HslO	-
FOC71_RS02975 (FOC71_02975)	-	559637..560908 (-)	1272	WP_003074762.1	toxic anion resistance protein	-
FOC71_RS02980 (FOC71_02980)	-	560927..561745 (-)	819	WP_003074761.1	hypothetical protein	-

Sequence

Protein

• Length: 809 a.a.
• Molecular weight: 89979.17 Da
• Isoelectric Point: 6.1458

>NTDB_id=450001 FOC71_RS02955 WP_003074770.1 554611..557040(+) (clpC) [Streptococcus intermedius strain FDAARGOS_769]
MKYSKALTESIESAQLLASHFETDYLESWQLLIAMANNPYSVAGSVLNDYPLEIDDFEKAAFHITGKVYQQEGDFTIWPF
SYRMKVLFLTAEQIAGAVHANNLGTEHILLAMLFDQGSLAARILEFIGFSYEDKEGVLRMTDLRKNLEHKASWNKEDLKA
IRHLNKSAAATRQTMANMMGMPPATSGGLEDYTRDLTEMAHMGLLEPVIGRDKEISRILQILSRKTKNNPVLVGDAGVGK
TALALGLAQRVADGQVPNELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEADGHVILFIDELHTIMGSGSGIDST
LDAANILKPALAKGTLRTIGATTQEEYQKYIEKDAALSRRFAKVTIEEPTVADSIAILQGLKKSYEDHHKVVITDSAIET
AVKYAHRYLTSKHLPDSAIDLLDEAAARVQNKSPQNHVKAELSAADEALMAGDWNKVGTLVEKESQPIVYKLRVKDEDVL
ATLSSLSGIPVQKLTQTDAKKYLNLEKELHKRVIGQNEAISAISRAIRRNQSGIRTSKRPIGSFLFLGPTGVGKTELAKA
LAEVLFDDETALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKVDFSNTIIIMTSNLGATSLRDDKTVGFGARDVRFDHENMEKRMMEELKKAYRPEFINRIDEKVVFHSLTSE
DMQEVVKIMVQPLISSLAEKGIKLKFQPSALKLLAQEGYDPEMGARPLRRILQTRVEDHLSELLLAGELKTGQSLKVGVK
AGKLKFEVL

Nucleotide

• Length: 2430 bp

>NTDB_id=450001 FOC71_RS02955 WP_003074770.1 554611..557040(+) (clpC) [Streptococcus intermedius strain FDAARGOS_769]
ATGAAATATTCAAAAGCTTTGACAGAAAGTATTGAATCAGCACAGTTATTAGCAAGTCATTTTGAAACGGATTATTTAGA
GTCTTGGCAGCTGTTGATTGCTATGGCAAATAATCCTTATAGTGTTGCTGGTTCAGTTTTAAATGATTACCCACTTGAAA
TTGATGATTTTGAAAAGGCAGCTTTTCATATCACGGGGAAAGTCTATCAACAAGAGGGAGACTTTACTATTTGGCCGTTT
TCTTATCGCATGAAAGTGCTATTTTTGACTGCTGAACAAATTGCAGGGGCGGTTCATGCTAATAATCTTGGGACAGAGCA
TATATTGCTAGCTATGTTATTTGACCAAGGAAGCTTGGCAGCGCGTATTCTTGAATTTATTGGTTTTAGTTACGAAGATA
AAGAAGGCGTTTTGCGCATGACAGATCTGCGGAAAAATTTAGAGCATAAGGCCAGCTGGAATAAAGAGGATTTAAAGGCT
ATTCGTCACCTAAATAAAAGTGCTGCAGCAACAAGACAAACGATGGCTAATATGATGGGAATGCCTCCTGCAACCAGTGG
CGGACTAGAAGATTATACTCGTGATCTAACTGAAATGGCTCATATGGGCCTTTTAGAACCGGTCATTGGGCGGGATAAAG
AGATTTCTCGCATACTTCAGATTTTAAGTCGTAAGACAAAAAACAATCCGGTTTTGGTAGGAGATGCAGGAGTTGGGAAG
ACAGCATTAGCTCTGGGTTTGGCGCAACGTGTGGCAGATGGTCAAGTTCCAAATGAGCTTGCAAAGATGAGAGTTTTAGA
GCTAGATTTAATGAATGTGGTGGCTGGAACTCGTTTTCGTGGTGATTTTGAAGAACGGATGAACAATATTATCAATGATA
TTGAAGCAGATGGGCATGTTATTCTCTTCATTGATGAGCTTCATACCATTATGGGTTCTGGCAGCGGGATTGACTCGACA
TTAGATGCAGCAAATATTCTCAAGCCGGCTTTGGCTAAAGGAACGCTCAGAACGATCGGTGCAACAACACAAGAAGAGTA
CCAAAAATATATCGAAAAAGATGCAGCTCTTTCACGAAGATTTGCCAAGGTTACTATTGAAGAACCAACGGTAGCTGACA
GCATTGCTATTTTACAGGGACTCAAGAAAAGTTATGAAGATCACCACAAGGTCGTGATTACGGATTCGGCAATTGAGACG
GCTGTTAAGTATGCGCATCGTTACCTGACTAGTAAACATCTACCTGACTCAGCGATTGACTTGCTAGACGAAGCTGCTGC
AAGGGTACAAAATAAAAGCCCGCAAAATCACGTAAAAGCAGAATTGAGTGCAGCAGATGAGGCTTTAATGGCAGGCGATT
GGAACAAAGTTGGTACGTTGGTGGAGAAAGAGAGTCAGCCAATCGTTTATAAATTAAGGGTGAAAGACGAGGATGTTTTA
GCAACACTCAGCAGTTTATCAGGTATTCCTGTGCAAAAGTTGACACAAACAGATGCGAAGAAATACCTCAATTTAGAAAA
GGAGTTACACAAACGAGTTATCGGGCAGAATGAAGCAATTTCTGCTATTAGTCGAGCGATTCGGCGCAATCAATCCGGTA
TCCGCACTAGCAAGCGTCCAATTGGCTCCTTTCTGTTCTTAGGGCCAACTGGGGTCGGAAAAACTGAGCTAGCTAAGGCT
TTGGCAGAAGTTCTCTTTGATGACGAAACAGCGTTAATTCGTTTTGATATGTCCGAATACATGGAGAAATTTGCTGCTAG
TCGTCTCAATGGAGCACCTCCAGGCTATGTTGGTTATGAAGAAGGGGGAGAATTAACTGAAAAGGTGCGTAATCGTCCTT
ACTCTGTGCTCCTCTTTGATGAGGTAGAAAAAGCACATCCTGATATTTTCAATGTGCTGCTCCAAGTCTTAGATGACGGG
GTTCTGACGGATAGCAAGGGCCGTAAGGTAGATTTTTCCAATACTATTATCATTATGACCAGCAATCTTGGTGCGACAAG
TTTACGGGACGATAAGACGGTTGGGTTCGGAGCAAGAGATGTTCGCTTTGATCATGAAAATATGGAAAAACGAATGATGG
AAGAGCTAAAGAAAGCTTATCGTCCAGAATTTATTAACCGAATTGACGAAAAGGTTGTTTTTCACAGTTTGACTAGCGAA
GACATGCAGGAAGTGGTGAAAATTATGGTGCAACCGCTCATTTCTAGTCTTGCAGAAAAAGGAATTAAACTCAAATTCCA
ACCGAGTGCTTTGAAGCTTCTAGCTCAAGAGGGCTATGATCCTGAAATGGGAGCTCGTCCATTGCGTCGAATTCTACAAA
CTCGAGTGGAAGACCATTTATCAGAATTACTTTTAGCAGGTGAGCTAAAAACGGGACAAAGCTTGAAAGTCGGTGTCAAG
GCTGGAAAATTGAAGTTTGAAGTGCTCTGA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (539-710)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (717-797)

• ATPase family associated with various cellular activities (AAA) (AAA) (231-349)

• AAA lid domain (AAA_lid_9) (371-439)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-60)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (91-133)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae TIGR4	76.942	100	0.771
clpC	Streptococcus pneumoniae Rx1	76.942	100	0.771
clpC	Streptococcus pneumoniae D39	76.942	100	0.771
clpC	Streptococcus mutans UA159	66.258	100	0.667
clpC	Streptococcus thermophilus LMG 18311	65.111	100	0.655
clpC	Streptococcus thermophilus LMD-9	64.988	100	0.654
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.399	100	0.508
clpC	Bacillus subtilis subsp. subtilis str. 168	45.885	99.135	0.455