Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   FOC71_RS00965 Genome accession   NZ_CP053999
Coordinates   188353..188826 (-) Length   157 a.a.
NCBI ID   WP_003075555.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 180432..188826 188353..188826 within 0


Gene organization within MGE regions


Location: 180432..188826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS00870 (FOC71_00870) - 180432..180839 (+) 408 WP_003073927.1 pyridoxamine 5'-phosphate oxidase family protein -
  FOC71_RS00875 (FOC71_00875) - 180880..181185 (-) 306 WP_003073925.1 helix-turn-helix domain-containing protein -
  FOC71_RS00880 (FOC71_00880) - 181301..181777 (+) 477 Protein_173 tyrosine-type recombinase/integrase -
  FOC71_RS00965 (FOC71_00965) comR/comR2 188353..188826 (-) 474 WP_003075555.1 transcriptional regulator Regulator

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 19418.37 Da        Isoelectric Point: 8.0146

>NTDB_id=449989 FOC71_RS00965 WP_003075555.1 188353..188826(-) (comR/comR2) [Streptococcus intermedius strain FDAARGOS_769]
MDFKELYEKVRGIVLKCRREYYVHLWELSDWDQEGMMVLYELVSRHPYLVEEEAHLYVYYKTKFRNHIKDILRKQESQKR
KLDRQVYEEVSEIGHKLSLKGLYLDELVILRDQLKSYQKQLSPAQQEQYERLLADERFKGRQAMLRELRTYLKDYEM

Nucleotide


Download         Length: 474 bp        

>NTDB_id=449989 FOC71_RS00965 WP_003075555.1 188353..188826(-) (comR/comR2) [Streptococcus intermedius strain FDAARGOS_769]
ATGGATTTCAAGGAGTTATATGAGAAAGTAAGGGGAATTGTGCTGAAGTGTCGGCGGGAATATTATGTCCATCTGTGGGA
GCTAAGCGATTGGGACCAAGAAGGGATGATGGTCTTGTATGAGTTGGTAAGTCGCCACCCCTATTTGGTAGAGGAAGAAG
CCCATCTCTATGTCTACTATAAGACAAAGTTTCGGAATCACATAAAGGATATTCTGCGCAAACAAGAAAGTCAAAAGCGC
AAACTGGATCGCCAAGTGTATGAAGAGGTAAGTGAGATTGGGCACAAGTTAAGTCTGAAAGGTCTGTATCTAGACGAGTT
GGTAATACTCCGCGATCAATTAAAGTCCTATCAAAAGCAACTGAGTCCCGCCCAGCAAGAGCAGTATGAGCGGTTACTGG
CAGATGAAAGGTTCAAAGGACGCCAAGCGATGCTTCGAGAGTTACGAACCTACTTAAAAGACTATGAGATGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

60.645

98.726

0.599
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

60.645

98.726

0.599
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

56.129

98.726

0.554
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

54.839

98.726

0.541
  comX/comX2 Streptococcus pneumoniae Rx1

54.194

98.726

0.535
  comX/comX1 Streptococcus pneumoniae Rx1

54.194

98.726

0.535
  comX/comX2 Streptococcus pneumoniae D39

54.194

98.726

0.535
  comX/comX1 Streptococcus pneumoniae D39

54.194

98.726

0.535
  comX/comX2 Streptococcus pneumoniae R6

54.194

98.726

0.535
  comX/comX1 Streptococcus pneumoniae R6

54.194

98.726

0.535
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

54.194

98.726

0.535
  comX/comX1 Streptococcus pneumoniae TIGR4

53.548

98.726

0.529
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

53.548

98.726

0.529
  comX/comX2 Streptococcus pneumoniae TIGR4

53.548

98.726

0.529
  comX/sigX Streptococcus mutans UA159

50

98.089

0.49
  comX/sigX Streptococcus suis isolate S10

49.677

98.726

0.49
  comX/sigX Streptococcus suis D9

49.677

98.726

0.49
  comX/sigX Streptococcus suis P1/7

49.677

98.726

0.49
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

43.226

98.726

0.427
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

43.226

98.726

0.427
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

43.226

98.726

0.427
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

43.226

98.726

0.427
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

43.226

98.726

0.427
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

43.226

98.726

0.427
  comX Streptococcus salivarius SK126

42.857

98.089

0.42
  comX/sigX Streptococcus salivarius strain HSISS4

42.208

98.089

0.414
  comX Streptococcus thermophilus LMG 18311

42.208

98.089

0.414
  comX Streptococcus thermophilus LMD-9

42.208

98.089

0.414
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

39.744

99.363

0.395