Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOC71_RS00835 Genome accession   NZ_CP053999
Coordinates   172715..174130 (-) Length   471 a.a.
NCBI ID   WP_003073942.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 167715..179130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS00810 (FOC71_00810) - 167876..168556 (-) 681 WP_003073952.1 rhomboid family intramembrane serine protease -
  FOC71_RS00815 (FOC71_00815) - 168549..169076 (-) 528 WP_003073950.1 5-formyltetrahydrofolate cyclo-ligase -
  FOC71_RS00820 (FOC71_00820) - 169110..170240 (-) 1131 WP_003073949.1 N-acetyldiaminopimelate deacetylase -
  FOC71_RS00825 (FOC71_00825) dapD 170253..170951 (-) 699 WP_003073947.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  FOC71_RS00830 (FOC71_00830) gltX 171069..172526 (-) 1458 WP_003073944.1 glutamate--tRNA ligase -
  FOC71_RS00835 (FOC71_00835) radA 172715..174130 (-) 1416 WP_003073942.1 DNA repair protein RadA Machinery gene
  FOC71_RS00840 (FOC71_00840) - 174088..174558 (-) 471 WP_003073941.1 cysteine hydrolase family protein -
  FOC71_RS00845 (FOC71_00845) - 174568..175011 (-) 444 WP_003073939.1 dUTP diphosphatase -
  FOC71_RS00850 (FOC71_00850) - 175105..176139 (-) 1035 WP_003073938.1 S66 peptidase family protein -
  FOC71_RS00855 (FOC71_00855) - 177203..178219 (+) 1017 WP_003073935.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 51650.21 Da        Isoelectric Point: 6.7134

>NTDB_id=449988 FOC71_RS00835 WP_003073942.1 172715..174130(-) (radA) [Streptococcus intermedius strain FDAARGOS_769]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEIEVAEVKNARVSLTGEKTRPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKVQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTTPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVVGVTTVGEVLKKVFDEVNKN

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=449988 FOC71_RS00835 WP_003073942.1 172715..174130(-) (radA) [Streptococcus intermedius strain FDAARGOS_769]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGATTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGCGGTGGTGTTGTACCAGGCAGTCTGGTTCTTATCGG
CGGCGATCCCGGTATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATG
TTTCTGGTGAAGAATCAGCAGAGCAGATCAAGTTGCGTAGCGAGCGTCTTGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAGTCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAACATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGGCCTATTTTAGCGGAGGTA
CAAGCCCTAGTAACACCGACTGTCTTTGGGAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCACCCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTCGGTTTTACCAAGATTTTTGTACCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAGTTGGTG
TGACAACTGTTGGTGAGGTTTTGAAAAAGGTGTTTGACGAAGTAAATAAAAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)

AAA domain (AAA_25)

(77-231)

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.496

95.966

0.849
  radA Streptococcus pneumoniae D39

88.496

95.966

0.849
  radA Streptococcus pneumoniae R6

88.496

95.966

0.849
  radA Streptococcus pneumoniae TIGR4

88.496

95.966

0.849
  radA Streptococcus mitis SK321

88.496

95.966

0.849
  radA Streptococcus mitis NCTC 12261

88.274

95.966

0.847
  radA Bacillus subtilis subsp. subtilis str. 168

61.589

96.178

0.592