Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   I5367_RS07510 Genome accession   NZ_CP065539
Coordinates   1479783..1480232 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain DGL1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1474783..1485232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5367_RS07470 (I5367_07470) ctaE 1474901..1475524 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  I5367_RS07475 (I5367_07475) ctaF 1475527..1475859 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  I5367_RS07480 (I5367_07480) ctaG 1475884..1476768 (+) 885 WP_023356881.1 cytochrome c oxidase assembly factor CtaG -
  I5367_RS07485 (I5367_07485) - 1476803..1477162 (-) 360 WP_012117490.1 YugN family protein -
  I5367_RS07490 (I5367_07490) - 1477303..1477746 (+) 444 WP_003154478.1 CBS domain-containing protein -
  I5367_RS07495 (I5367_07495) - 1477831..1478871 (+) 1041 WP_007409690.1 CAP domain-containing protein -
  I5367_RS07500 (I5367_07500) - 1479047..1479457 (+) 411 WP_012117491.1 YlbD family protein -
  I5367_RS07505 (I5367_07505) - 1479473..1479712 (+) 240 WP_003154475.1 YlbE-like family protein -
  I5367_RS07510 (I5367_07510) ylbF 1479783..1480232 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  I5367_RS07515 (I5367_07515) - 1480291..1480563 (+) 273 WP_003154470.1 YlbG family protein -
  I5367_RS07520 (I5367_07520) rsmD 1480863..1481417 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I5367_RS07525 (I5367_07525) coaD 1481422..1481904 (+) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  I5367_RS07530 (I5367_07530) ylbJ 1481923..1483149 (-) 1227 WP_012117492.1 sporulation integral membrane protein YlbJ -
  I5367_RS07535 (I5367_07535) - 1483329..1484108 (+) 780 WP_007409696.1 patatin family protein -
  I5367_RS07540 (I5367_07540) sepM 1484114..1485136 (+) 1023 WP_012117493.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=449980 I5367_RS07510 WP_003154472.1 1479783..1480232(+) (ylbF) [Bacillus amyloliquefaciens strain DGL1]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=449980 I5367_RS07510 WP_003154472.1 1479783..1480232(+) (ylbF) [Bacillus amyloliquefaciens strain DGL1]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGGTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879