Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   I5367_RS02980 Genome accession   NZ_CP065539
Coordinates   564384..565019 (+) Length   211 a.a.
NCBI ID   WP_012116939.1    Uniprot ID   A7Z1V9
Organism   Bacillus amyloliquefaciens strain DGL1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 559384..570019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5367_RS02950 (I5367_02950) - 560358..560657 (-) 300 WP_012116933.1 spore coat protein -
  I5367_RS02955 (I5367_02955) - 560673..560870 (-) 198 WP_012116934.1 hypothetical protein -
  I5367_RS02960 (I5367_02960) - 560889..562025 (-) 1137 WP_012116935.1 zinc-dependent alcohol dehydrogenase -
  I5367_RS02965 (I5367_02965) - 562044..562412 (-) 369 WP_012116936.1 spore coat protein -
  I5367_RS02970 (I5367_02970) - 562430..562675 (-) 246 WP_012116937.1 hypothetical protein -
  I5367_RS02975 (I5367_02975) - 563231..564391 (+) 1161 WP_049753467.1 sensor histidine kinase -
  I5367_RS02980 (I5367_02980) vraR 564384..565019 (+) 636 WP_012116939.1 response regulator transcription factor Regulator
  I5367_RS02985 (I5367_02985) - 565118..567271 (+) 2154 WP_012116940.1 MMPL family transporter -
  I5367_RS02990 (I5367_02990) - 567305..568027 (-) 723 WP_012116941.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  I5367_RS02995 (I5367_02995) abc-f 568153..569781 (-) 1629 WP_012116942.1 ribosomal protection-like ABC-F family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23622.28 Da        Isoelectric Point: 5.0215

>NTDB_id=449947 I5367_RS02980 WP_012116939.1 564384..565019(+) (vraR) [Bacillus amyloliquefaciens strain DGL1]
MYKVLIADDHLVVREGLKLLIETNDHYTITGEAENGKTAVRLAEELKPDVILMDLYMPEMSGLEAIKQIKEHSDVPIIIL
TTYNEDHLMIEGIESGANGYLLKDTSSETLFHTMDAAVRGEVLLQPDILRRFREMKMERANANETQLTDKEIIVLEAVAQ
GHKSKAIAFDLGISERTVKARLTSIYNKLGADSRTEAVTIAMQKGILKLNI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=449947 I5367_RS02980 WP_012116939.1 564384..565019(+) (vraR) [Bacillus amyloliquefaciens strain DGL1]
ATGTATAAAGTGTTAATAGCAGATGACCATCTTGTCGTCAGAGAAGGTCTGAAGCTTTTGATAGAAACAAATGACCATTA
CACCATAACGGGAGAGGCGGAAAACGGGAAAACCGCCGTCCGCCTCGCAGAGGAACTAAAGCCCGATGTCATTCTCATGG
ATCTGTACATGCCGGAAATGAGCGGGCTGGAAGCCATTAAACAGATAAAAGAGCATTCTGATGTGCCGATTATTATTTTG
ACGACCTATAATGAAGATCATCTGATGATAGAAGGCATTGAATCAGGCGCGAACGGTTATCTGCTGAAAGACACAAGCTC
AGAAACCTTATTTCATACGATGGATGCGGCGGTCAGGGGAGAAGTGCTTCTGCAGCCGGACATCTTGCGGCGTTTCCGGG
AAATGAAAATGGAACGGGCAAATGCCAATGAAACACAGCTGACGGACAAGGAAATCATAGTTCTAGAAGCCGTTGCGCAA
GGACATAAAAGCAAAGCGATCGCCTTCGATTTAGGAATCTCAGAGCGGACGGTAAAAGCGAGATTAACATCGATTTATAA
CAAATTAGGCGCTGATTCGCGGACGGAAGCCGTCACCATTGCCATGCAAAAAGGCATTCTGAAACTGAATATATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-201)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z1V9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.364

99.052

0.36